admixr - Perform ADMIXTOOLS analyses directly from R, without having to deal with par/pop/log files ever again.
schmutzi - estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
deML - Maximum likelihood demultiplexing.
leeHom - Bayesian reconstruction of ancient DNA fragments.
freeIbis - new GPL version of Ibis with calibrated quality scores.
Tools for Multiplex sequencing on the Illumina platform
ANFO - a mapper for ancient DNA
Biohazard - Bioinformatics library and assorted tools in Haskell
Heffalump - Efficient storage of variation data
Jivebunny - Probabilistic demultiplxing
PatMaN - a DNA pattern matcher for short sequences
BamTable - a rapid BAM file filter
PTS - Parallel Tagged Sequencing
Mask - Mask bad probes in Affymetrix expression data
FUNC - Gene Analyzer Application
Onto - Ontology Projects
GenWiki - Wiki of Genetics
JBrowse - archaic genome browser
ABAEnrichment - R package to test for gene expression enrichment in human brain regions
The high-coverage genome of a Neandertal from Chagyrskaya cave
Department of Genetics / Bioinformatics Group
