Pages that link to "Q28476558"
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The following pages link to The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach (Q28476558):
Displaying 50 items.
- New virologic tools for management of chronic hepatitis B and C (Q27026914) (← links)
- Recent advances in inferring viral diversity from high-throughput sequencing data (Q28076177) (← links)
- Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data (Q28727944) (← links)
- Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data (Q29394572) (← links)
- Deep sequencing for HIV-1 clinical management (Q30241725) (← links)
- Defining the fitness of HIV-1 isolates with dual/mixed co-receptor usage (Q30278577) (← links)
- Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor. (Q30378764) (← links)
- Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification (Q30421085) (← links)
- Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data (Q30658257) (← links)
- Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism. (Q33622927) (← links)
- A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1. (Q34062608) (← links)
- QuRe: software for viral quasispecies reconstruction from next-generation sequencing data (Q34076081) (← links)
- Dynamics of envelope evolution in clade C SHIV-infected pig-tailed macaques during disease progression analyzed by ultra-deep pyrosequencing (Q34200095) (← links)
- Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data (Q34205837) (← links)
- Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. (Q34207464) (← links)
- De novo assembly of highly diverse viral populations (Q34413887) (← links)
- Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism (Q34482589) (← links)
- Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing (Q34567556) (← links)
- VTBuilder: a tool for the assembly of multi isoform transcriptomes. (Q34659483) (← links)
- A multiple-alignment based primer design algorithm for genetically highly variable DNA targets (Q34960846) (← links)
- Quality score based identification and correction of pyrosequencing errors (Q34988757) (← links)
- Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection (Q35759184) (← links)
- Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations (Q35914387) (← links)
- Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen. (Q36023047) (← links)
- Clinical implications of HIV-1 minority variants (Q36811249) (← links)
- Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism. (Q36826759) (← links)
- Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions (Q37174389) (← links)
- Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies (Q37268236) (← links)
- Deep sequencing: becoming a critical tool in clinical virology (Q38226696) (← links)
- Next-generation sequencing in veterinary medicine: how can the massive amount of information arising from high-throughput technologies improve diagnosis, control, and management of infectious diseases? (Q38268384) (← links)
- Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters (Q38398452) (← links)
- Multi-drug resistant Klebsiella pneumoniae strains circulating in hospital setting: whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations (Q38725234) (← links)
- Characterization of Hepatitis C Virus (HCV) Envelope Diversification from Acute to Chronic Infection within a Sexually Transmitted HCV Cluster by Using Single-Molecule, Real-Time Sequencing (Q39026171) (← links)
- Probabilistic inference of viral quasispecies subject to recombination (Q41814480) (← links)
- VirGenA: a reference-based assembler for variable viral genomes. (Q41926544) (← links)
- Next-Generation Sequencing to Help Monitor Patients Infected with HIV: Ready for Clinical Use? (Q42234370) (← links)
- Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges (Q42265188) (← links)
- Protein structural disorder of the envelope V3 loop contributes to the switch in human immunodeficiency virus type 1 cell tropism (Q45326031) (← links)
- A Bioinformatic Pipeline for Monitoring of the Mutational Stability of Viral Drug Targets with Deep-Sequencing Technology (Q47130835) (← links)
- On the effective depth of viral sequence data (Q47159566) (← links)
- The Role of HIV-1 Drug-Resistant Minority Variants in Treatment Failure. (Q47569409) (← links)
- Ultradeep single-molecule real-time sequencing of HIV envelope reveals complete compartmentalization of highly macrophage-tropic R5 proviral variants in brain and CXCR4-using variants in immune and peripheral tissues. (Q52567903) (← links)
- Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. (Q54974242) (← links)
- Challenges in the analysis of viral metagenomes. (Q55045795) (← links)
- Role of phenotypic investigation in the era of routine genotypic HIV-1 drug resistance testing (Q56792140) (← links)
- Characterization of minority HIV-1 drug resistant variants in the United Kingdom following the verification of a deep sequencing-based HIV-1 genotyping and tropism assay (Q58573578) (← links)
- Clonal analysis of HIV-1 genotype and function associated with virologic failure in treatment-experienced persons receiving maraviroc: Results from the MOTIVATE phase 3 randomized, placebo-controlled trials (Q60933971) (← links)
- The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences (Q63915265) (← links)
- A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43 (Q84315405) (← links)
- A single variant sequencing method for sensitive and quantitative detection of HIV-1 minority variants (Q95326815) (← links)