Bio Molecules
Bio Molecules
H—C—OH H—C—H
Thus, glucose is epimeric with D-(+)-mannose and Some important monosaccharides are as follows
D-(+)-galactose as shown below
CHO CHO CHO 1. Glucose (C6 H12O6 )
Glucose is a monosaccharide, aldohexose and reducing
H—C—OH H—C—OH HO—C—H
sugar. It is found in ripe grapes (hence named
HO—C—H HO—C—H HO—C—H grape-sugar), honey and most sweet fruits. It is also a
normal constituent of blood and found in the urine of
HO—C—H H—C—OH H—C—OH diabetics.
H—C—OH H—C—OH H—C—OH The blood normally contains 65 to 110 mg of glucose per
100 mL (hence named blood sugar). In the combined state,
CH2OH CH2OH CH2OH it occurs in glucosides, disaccharides and polysaccharides.
D-(+)-galactose D-(+)-glucose D-(+)-mannose
Epimers of glucose Methods of Preparation
(i) From sucrose Cane sugar (sucrose) on acid hydrolysis
Ring Structure of Monosaccharides in the presence of alcohol, gives a mixture of glucose
The ring form of monosaccharides is favoured in aqueous and fructose.
solution. Structures of pentoses and hexoses are cyclic H+
involving five or six membered rings containing an C12H 22O11 + H 2O ¾® C6H12O6 +C6H12O6
Sucrose Glucose Fructose
oxygen atom.
Glucose being less soluble in alcohol than fructose
The five membered ring containing an oxygen atom separates out by crystallising on cooling (fractional
because of its similarity with furan is called the furanose crystallisation).
form and the six membered ring containing an oxygen
atom because of its similarity with pyran is called the (ii) From starch Glucose is obtained on a large scale by
pyranose form. the hydrolysis of starch with dilute H 2SO4 or dilute
HCl under pressure.
H+
(C6H10O5 )n + nH 2O ¾¾¾¾¾¾® nC6H12O6
393 K, 2-3 atm
O O Starch Glucose
Furan Pyran After neutralisation with CaCO3 and filteration,
During ring formation, reaction between an aldehyde and filterate is decolourised by boiling with animal charcoal
an alcohol forms a hemiacetal. A hemiketal is an analogous and then concentrated under reduced pressure and
finally crystallised.
product formed by reaction of a ketone with an alcohol.
(iii) From lactose or maltose
Formation of a hemiacetal or a hemiketal,
H+
OR C12H 22O11 + H 2O ¾® C6H12O6 + C6H12O6
H+
C==O + ROH ¾® C Lactose Glucose Galactose
R¢ OH H+
C12H 22O11 + H 2O ¾® 2C6H12O6
(where, R¢ = H or R) Maltose Glucose
If aldehyde (i.e. R¢ = H) ¾® hemiacetal,
Physical Properties of Glucose
If ketone (i.e. R¢ = R ) ¾® hemiketal
l Glucose is a white crystalline solid (m.p. 146°C). It
As a result of ring formation also occurs in the form of monohydrate, C6H12O6 × H 2O
Carbon number 1-(C1) becomes asymmetric (chiral) and (m.p. 86°C).
hence, monosaccharides exist in two stereoisomeric forms, l Glucose is readily soluble in water, sparingly soluble
a and b-form. In the a-form, the —OH at C1 is towards right in alcohol and insoluble in ether.
while in the b-form, the —OH at C1 is towards left.
l It is optically active and dextrorotatory (hence named
H OH HO H
dextrose). It shows mutarotation (The change in
C— —OH group C— specific rotation of an optically active compound in
position
O O solution with time, to an equilibrium value is called
a-position b-position mutarotation)
A pair of stereoisomers which differ in configuration only l It has a very sweet taste but about three fourth as
around C1 carbon are called anomers and the C1 is called sweet as sucrose (cane-sugar).
the anomeric carbon (or glycosidic carbon).
1128 JEE Main Chemistry
H
Chemical Reactions of Glucose
CH N.NHC6H5
(i) Reduction C O
H
(a) On reduction with NaBH 4 or Na-Hg, glucose yields H2N. NH. C6H5 C
CHOH OH
sorbitol. –H2O
(CHOH)3
CHO CH 2OH (CHOH)3
½ NaBH4 or ½ CH2OH
(CHOH)4 + 2[H] ¾¾¾¾¾® (CHOH)4 CH2OH
Na-Hg /H2O Glucose Glucose phenyl hydrazone
½ ½
CH 2OH CH 2OH
Glucose Sorbitol
CH NH CH—NH
(b) On reduction with HI and red P, it gives a mixture NH.C6H5
of n-hexane and 2-iodohexane. C6H5NH. NH2 C O C—O—H
–H2O –C6H5NH2 (CHOH)
Red P/HI (CHOH)3 3
C6H12O6 ¾¾¾¾® CH3CH 2CH 2CH 2CH 2CH3
Glucose D n -hexane
CH2OH CH2OH
+
Imino ketone Hydrogen bonded
CH3CHICH 2CH 2CH 2CH3 intermediate
2-iodohexane CH [Link].C6H5
CH NH
(ii) Reaction with hydroxylamine Glucose forms glucose
C N.NHC6H5 C6H5NH. NH2 C [Link].C6H5
oxime with hydroxylamine.
–NH3 (CHOH)3
CHO CH == NOH (CHOH)3
½ NH2OH ½
(CHOH)4 ¾¾¾® (CHOH)4 CH2OH CH2OH
–H2O
½ ½ Glucosazone
CH 2OH CH 2OH (yellow crystalline solid)
Glucose Glucose oxime
Osazone formation is given by only a-hydroxy
(iii) Reaction with hydrogen cyanide An addition product, aldehyde and a-hydroxy ketones. (glucose, fructose
glucose cyanohydrin is formed. and mannose form the same osazone, i.e. glucosazone).
HO CN Glucosazone is a yellow crystalline solid, sparingly
CHO CH soluble in water and has sharp melting point. Due to
these properties, it is used to identify glucose.
(CHOH)4 HCN (CHOH)4 (v) Oxidation
CH2OH CH2OH (a) With bromine water, glucose gives gluconic acid.
Glucose Glucose cyanohydrin CHO COOH
½ Br2-H2O ½
(iv) Reaction with phenyl hydrazine When treated with (CHOH)4 + [O] ¾¾¾¾® (CHOH)4
equimolar quantities of phenyl hydrazine, glucose ½ ½
yields a phenyl hydrazone. CH 2OH CH 2OH
H H Glucose Gluconic acid
(b) Glucose on oxidation with Fehling’s solution and
C O C [Link].C6H5 Tollen’s reagent gives coloured precipitate and
+ [Link].C6H5 gluconic acid.
(CHOH)4 –H2O (CHOH)
4
CHO COOH
CH2OH CH2OH
½ ½
Glucose Glucose phenyl (CHOH)4 + Cu2+ or Ag+ ¾® (CHOH)4 + Cu2O ¯
hydrazone
½ ½ Red ppt.
However, when glucose is warmed with excess of CH 2OH CH 2OH or
phenyl hydrazine a crystalline product, glucosazone Glucose Gluconic acid
Ag ¯
is formed. Silver mirror
Bimolecules 1129
(c) On oxidation with strong acids like nitric acid, (x) Reaction with metallic hydroxides Glucose reacts
glucose gives glucaric (saccharic) acid. with metallic hydroxides like Ca(OH)2 , Ba(OH)2 ,
COOH Sr(OH)2 etc., to form metallic glucosates, which are
CHO
½ ½ soluble in water.
HNO3
(CHOH)4 + 3[O] ¾¾¾® (CHOH)4 C6H11O5 — OH + H O — Ca — OH ¾®
D
½ ½
CH 2OH COOH C6H11O5 — O — Ca — OH + H 2O
Glucose Glucaric acid
(saccharic acid) Calcium glucosate
(xi) Reaction with periodic acid Periodic acid splits
(vi) Reaction with acetyl chloride Glucose reacts with
glucose into formic acid and formaldehyde.
acetyl chloride to form glucose penta-acetate.
CHO CHO CHO
½ ZnCl 2 ½ ½ HIO 4 or H5 IO 6
(CHOH)4 + 5CH3COCl ¾¾® (CHOCOH3 )4 + 5HCl (CHOH)4 ¾¾¾¾¾¾® 5HCOOH + HCHO
Formic acid
½ ½ ½ Formaldehyde
CH2OH
CH3COCH2CH2COOH + H2O
D-(–)-fructose
Laevulic acid
1130 JEE Main Chemistry
The two cyclic hemiacetal forms of glucose differ only in Chemical Properties
the configuration of the hydroxyl group at C-1 called
The chemical reactions of fructose are almost similar to
anomeric carbon. Such isomers, i.e. a-form and b-form
are called anomers. those of glucose. The only different behaviour are
oxidation and reduction. These are as follows
Sametimes, glucose is illustrated as a chair form
because it is a more accurate representation of (i) Reduction On reduction with NaBH 4 or Na-Hg/H 2O,
bond-angles of the molecule, (Reeves, 1950). fructose forms a mixture of sorbitol and mannitol.
H H CH2OH CH2OH CH2OH
6 6
HO—
4
CH2OH HO—
4
CH2OH C O H—C—OH HO—C—H
5 O O + 2[H] +
H 5 2
H
1 1 (CHOH)3 (CHOH)3 (CHOH)3
H 2 —H H —OH
3 3
HO— HO HO— HO CH2OH CH2OH CH2OH
OH H Sorbitol Mannitol
Glucose
H H
a-anomer b-anomer (stable) Note The reduction of glucose with NaBH4 forms D-sorbitol
Anomer forms of glucose while that of fructose forms a mixture of D-sorbitol and
In b-anomer, the glycosidic hydroxyl group is equatorial D-mannitol (they differ in configuration).
and as a general rule, the configuration with greatest (ii) Oxidation Fructose is not oxidised by mild oxidising
number of large groups in equatorial orientation is the agent like Br2 water. However, when oxidised with
most stable form. nitric acid, fructose is converted into a mixture of
Thus, b-anomer predominates in the equilibrium mixture. trihydroxy glutaric, glycollic and tartaric acids.
The boat form of glucose is unstable. COOH
Oxidative
cleavage
2. Fructose (CHOH)2 + CO2 + H2O
CH2OH at C1-C2
The important ketohexose is D-(–)-fructose (also known as C O CH2OH
laevulose). In the free state, it is present along with HNO3 Trihydroxy
honey and most sweet fruits (berries, melons etc.), hence (CHOH)3 glutaric acid
Oxidative COOH
named as fruit sugar. CH2OH
CH2OH cleavage
In the combined state, fructose is present in sucrose and + (CHOH)2 + H2O
Glucose at C2-C3 COOH
insulin. It is the sweetest monosaccharide. Glycollic acid CH2OH
Some methods of preparation of fructose are Tartaric acid
(i) By hydrolysis of cane sugar with dilute acids. Since a mixture of acids each containing fewer
H+ , D carbon atoms than fructose is obtained, the carbonyl
C12H22O11 + H2O ¾¾® C6 H12O6 + C6 H12O6
Cane sugar
group in fructose must be a ketonic group.
D-(+)- glucose D-(–)-fructose
The solution having equal molecules of D-glucose and (iii) Reducing nature Unlike ketones, fructose can reduce
D-fructose is termed as invert sugar and the process is Fehling’s solution and Tollen’s reagent. This is
known as inversion. probably due to formation of an equilibrium mixture
(ii) By calcium fructosate of glucose, mannose and fructose in alkaline solution.
C6 H11 O5 —O—Ca—OH + CO2 ¾® C6 H12O6 + CaCO3 (iv) Action of conc. HCl
Fructose HCl
(iii) From insulin C6H12O6 ¾¾® H3C × CO × CH 2 × CH 2 × COOH + HCOOH
HCl Glucose Laevulinic acid Formic acid
(C6 H10 O5 )n + nH2O ¾¾® nC6 H12O6
+ H 2O
(Insulin is a polysaccharide which occurs in dahlia Structure of Fructose
tubers and Jerusalem artichokes).
Some major structure of fructose are discussed below
Physical Properties 1. Open Chain Structure
l Fructose is colourless crystalline compound
The open chain structure of fructose may be represented
(m.p. 102°).
as below
l It is soluble in water and insoluble in benzene and * * *
ether. CH 2 — C— CH — CH — CH — CH 2
½ ½½ ½ ½ ½ ½
l It is less soluble in water than glucose. Like glucose, O OH OH OH OH
OH
it also shows mutarotation.
1132 JEE Main Chemistry
The structure contains three asymmetric carbon atoms Oligosaccharides : General Features
and eight optically active forms but only six are
known. The configuration of D-(–)-fructose is Molecules of these carbohydrates are made up of a small
1 number of monosaccharide units joined together by
CH2OH
æ ½ ½ ö
2
C O ç ÷
glycosidic bonds ç — C— O — C— ÷ . Glycosidic bonds are
3 ç ½ ½ ÷ø
HO—C—H è
4 established during the condensation of monosaccharides.
H—C—OH The process is called dehydration.
5
H—C—OH These are further classified into disaccharides,
6 trisaccharides, tetrasaccharides etc., depending upon the
CH2OH number of monosacharides, they peroxide on hydrolysis.
D-(–)-fructose
Some important oligosaccharides are as follows
2. Cyclic Structure
Fructose also has a cyclic structure in aqueous
1. Sucrose (C12 H 22O11 )
solution, i.e. intramolecular hemiketal. It also exhibit It is commercial sugar, which is also called cane sugar
mutarotation. because most of it is obtained from sugarcane (16-20%). It
1 is also present in sugarbeet (10-15%), pineapple (10-12%),
CH2OH 1 apricot banana, mango and honey. It is formed by
1
HOH2C 2 OH 2 HO 2 CH2OH condensation of one molecule each of glucose and fructose.
C C O C
6 6
3 3 3 CH2OH CH2OH
HO—C—H HO—C—H HO—C—H 5 5
H O H H O H
4 O 4 4 O H H
H—C—OH H—C—OH H—C—OH 4 1 4 1
OH H OH H
5 5 5 HO 3 OH HO
H—C—OH H—C—OH H—C—OH 2 3 2
6
CH2
6
CH2OH 6 OH OH Glucosidic H HO
CH2 a-D-(–)-gluco linkage
a-D-(–)-fructose a-D-(–)-fructose b-D-(–)-fructose pyranose
[a]D = –21° [a]D = –92° [a]D = –133° + O
–H2O
Cyclic structure fructose 6 O 6 O
HOH2C OH HOH2C
3. The Haworth Projection Formulae 5
H HO
2 5
H HO
2
Due to the presence of fructose, invert sugar is sweeter 3. Maltose (C12 H 22O11 )
than sucrose. Invert sugar is used to coat chocolate.
It is obtained by partial hydrolysis of starch by diastase
Sweetening power of common sugars : Fructose > enzyme present in malt, i.e. sprouted barley seeds
Invert sugar > Sucrose > Glucose > Maltose > Lactose (hence named maltose or malt sugar).
l On heating (200°C), sucrose melts and on cooling Diastase
forms a glassy yellow solid known as barley sugar. 2(C6H10O5 )n + nH 2O ¾¾¾® nC12H 22O11
When heated above its melting point, it loses water Maltose
and gives a brown substance known as caramel. On
further heating sucrose gets charred to almost pure
Properties
carbon (sugar charcoal). l Maltose is a white crystalline solid (with m.p.
l Sucrose on acetylation gives sucrose octaacetate. This 160°-165°C), soluble in water and dextrorotatory.
shows the presence of eight —OH groups in sucrose. 6 6
CH2OH CH2OH
l Sucrose does not form oxime or osazone. It shows the 5 5
H O H H O H
absence of C ==O group.
4
H 1 4
H 1
l Sucrose does not reduces Tollen’s reagent and OH H OH H
Fehling’s solution. It shows the absence of —CHO HO OH HO OH
3 2 3 2
group in sucrose. H OH H OH
l Fermentation In the presence of yeast, it yields a-D-(+)-glucopyranose a-D-(+)-glucopyranose
ethanol and carbon dioxide. a-glycosidic –H2O
Invertase C H O + C H O linkage
C12H22O11 + H2O ¾¾¾¾® 6 12 6 6 12 6 6 6
Glucose Gructose CH2OH CH2OH
Zymase
C6 H12O6 ¾¾¾® 2C2H5 OH + CO2 5 O H 5 O H
Glucose Ethanol H H
4
H 1 4
H 1
l With conc. H 2SO4 , sucrose loses water to give sugar OH H OH H
HO O OH
charcoal (charring of sugar). 3 3
2 2
C12H22O11 + H2SO4 ¾® 12C + 11H2O H OH H OH
C + 2H2SO4 ¾® 2SO2 + CO2 + 2H2O Representation of a-1,4-glycosidic linkage
A small amount of sulphurdioxide is also observed l Maltose is a reducing sugar. It reduces Fehling’s
due to reduction of the acid. solution Tollen’s reagent, it forms an oxime and an
osazone and undergoes mutarotation. It indicates that
2. Lactose (C12 H 22O11 ) at least one aldehyde group is free in it.
It occurs in the milk of all animals (milk-sugar). It is a (Free aldehyde group can be produced at C-1 of second
white crystalline solid (with m.p. 203°C), soluble in water glucose in solution which shows reducing property).
and is dextrorotatory. It is hydrolysed by dilute acid or
enzyme lactose, to an equimolar mixture of D-(+)-glucose Example 1. What are the functional groups present in the
and D-(+)-galactose. Lactose is a reducing sugar, forms structure of maltose ? (JEE Main 2020)
an oxime and osazone and undergoes mutarotation. It (a) One ketal and one hemiketal
gets hydrolysed by emulsin also, an enzyme which (b) One acetal and one ketal
specifically hydrolyses b-1,4-glycosidic linkage. (c) One acetal and one hemiacetal
6 (d) Two acetals
CH2OH H OH
5 3 2 Sol. (c) The functional groups present in the structure of maltose is
HO O OH HO OH one acetal and one hemiacetal. It is illustrated in following structure.
H OH H
4 1 + 4 1 CH2OH Acetal CH2OH
OH H H
H
3 2
H H
5 OH O H O
H H H
H OH CH2OH H H
6
b-D-(+)-galactose
b-D-(+)-glucose OH H OH H
b-glycosidic linkage –H2O HO O OH
CH2OH H OH
O H OH H OH Hemiacetal
HO O OH
H OH Maltose
H
OH H H
H H H
O H
Polysaccharides : General Features
It composed of large number of monosaccharides units
H OH CH2OH
(+)-lactose joined together by glycosidic linkages. These are used as
Representation of b-1,4-glycosidic linkage
food storage or structural material.
1134 JEE Main Chemistry
Some important polysaccharide are as follows branched chain polymer of a-D-glucose units in which chain is
formed by C1-C4 glycosidic linkage whereas branching occurs by
1. Starch C1-C6 glycosidic linkage.
It is a polymer of a-glucose. It is found in cereals, 6
roots, tubers etc. It is the most important dietary CH2OH CH2OH CH2OH
source. It consists of two cmponents, i.e. amylose H O H H O H H O H
5
and amylopectin. Amylose is water soluble H H H
4 1 4 1 4 1
component which constitutes about 15-20% of – OH H OH H OH H –
O O O O
starch. It is a long unbranched chain with 3 2
200-10000 a-D-( + )-glucose units held by C1-C4 H OH H OH H OH
glycosidic linkage. a-link a-link
4 H 1 4
H 1
– OH H OH H a-link
O O
H OH H OH
O Branch at C6
6
CH2OH CH2 CH2OH
H O H H 5 O H H O H
4 H 1 4
H 1 4 H 1
– OH H OH H OH H –
O O O O
H OH H OH H OH
a-link a-link
Amylopectin
Representation of glycosidic linkage in amylopectin and amylose
2. Cellulose 3. Glycogen
It occur exclusively in plants. It is predominant
constitutent of cell wall of plant cells. It is a It is known as animal starch because its structure is similar to
straight chain polysaccharide composed of amylopectin and is more highly branched. It is stored in animal
b-D-glucose units joined by glycosidic linkage body and present in liver, muscles and brain. In need of glucose,
between C1 of the glucose and C4 of next glycose. enzymes break the glycogen down to glucose. It is also found in
yeast and fungi.
HOH2C
O
O
B. a-Amino Acids
Bifunctional organic compounds containing carboxylic and
OH amino group either at the same carbon atom or at the nearby
HOH2C O carbon atoms are called amino acids. These are the monomers
of proteins. Usually, amino acids have primary amino group but
O
OH proline is a secondary amine.
Natural proteins can be broken down into about 20 different
OH a-amino acids (19 a-amino acids and 1 a-imino acid). These
HOH2C O molecules differ in the nature of the R-group attached to the
O alpha carbon. R-group can be
OH
l An aliphatic side chain
OH b-links l A hydroxyl group containing side chain
O l A sulphur atom containing side chain
l A side chain containing acidic (carboxylic) group or amides
OH group
Cellulose l A side chain containing basic groups
Bimolecules 1135
l A side chain containing aromatic ring
Amino acids, their Symbols and Structures
Group I Side Chains with Aliphatic Carbon Chains
H CH3 CH CH2 CH
OH OH CH3 SH CH2
S CH2
Serine (Ser) Threonine (Thr) Cysteine (Cys) Methionine (Met)
Group IV-Side Chains With Acid Groups or their Amides
C C CH2 CH2
O O– O NH2 C C
O O– O NH2
CH
OH N
H
Phenylalanine (Phe) Tyrosine (Tyr) Tryptophan (Trp)
Group VII-Imino Acids
H H
–
H2N C COO H2N C COO–
CH2 C
OH OH
Proline (Pro) 4-hydroxyproline (Hyp)
1136 JEE Main Chemistry
the same isoelectric point. Neutral amino acids have Transport protein Haemoglobin Transportation of respiratory
gases (O2 and CO2 )
isoelectric point from pH 5.5 to 6.3 (e.g. glycine = 6.1).
Contractile protein Active myosin Responsible for contraction of
Acidic amino acids have isoelectric point around 3 muscles
(e.g. aspartic acid = 3) and basic amino acids have Protective proteins Antibodies Complex with foreign proteins
isoelectric points from pH 7.6 to 10.8 (e.g. Lysine = 9.7) Hormones Insulin Regulate glucose metabolism
Amino acids usually shows their lowest solubility in a Toxins Snake venom Incapcitate prey
solution at the isoelectric point. Since, there is a highest
concentration of dipolar ion. This property has been used Proteins are important components of most foods. In the
in the separation of different amino acids obtained from digestive system, proteins are broken down into small
the hydrolysis of proteins. molecules called a-amino acids. These molecules are
reassembled in cells to form other proteins required by
a-amino acids have protonated —NH3+ group which
the body.
exerts a strong electron withdrawing inductive effect
(-I effect) and therefore, increases acid strength. That’s
why the carboxylic acid groups of the amino acids are so
Features of Proteins
much more acidic (pK a = 2) than a carboxylic acid such as
l A pure protein is tasteless, odourless and colourless.
acetic acid (pK a = 4.76 ). If an amino acid has amino group Chromoproteins are coloured. Most of proteins are
and one carboxyl group such as alanine, it has two pK a hydrophilic. They do not have sharp melting point.
values. l All proteins on partial hydrolysis give peptide of
The isoelectric point of this amino acid has the average varying molecular masses, which on complete
value of the both pK a values. hydrolysis gives a-amino acids.
Hydrolysis Hydrolysis
H3C—CH—COOH ¬ pKa = 2.34 Proteins ¾¾¾® Peptides ¾¾¾¾® a-amino-acids
+ l All the proteins are laevorotatory due to the presence
NH3 pKa = 9.69 of asymmetric carbon in a-amino acids.
1138 JEE Main Chemistry
protein) which carries oxygen, there are 574 amino l Although, the hydrogen bond is fairly weak, their
acid units in a definite sequence but the replacement large number stabilises the structure. The imino
of only one a-amino acid results in defective acid, proline along with amino acids glycine,
haemoglobin. This is the cause of a disease, called serine do not fit into the normal a-helix. They
sickle cell anaemia. disrupt the a-helical structure and cause sharp
In the patients suffering from this disease, the bends in the direction of the chain. They are called
defective haemoglobin precipitates causing the cells to helix-breakers. a-helix is found in both fibrous and
sickle shaped and sometimes even makes them burst globular proteins. Fibrous proteins such as a-keratin
leading ultimately to death. Normal haemoglobin in hair, nail, wool, skin, beaks, claws and myosin in
has–Val–His–Leu–Thr–Pro–Glu–Lys. muscle have a-helix structure.
On the other hand, sickle cell haemoglobin structure. l Globular proteins also contain segments of a-helix,
because of the a-helical structure, human hair fibres
Val–his–Leu–Thr–Pro–Val–Glu–Lys structure.
are stretchable and elastic to some extent. When hair
is stretched, the H-bonds are broken but when the
2. Secondary Structure stretching force is removed, the H-bonds reformed
Most of the long polypeptide chain are folded or coiled to again.
produce specific three-dimensional structures. These are
(ii) b-conformation (b-pleated sheet) it results from
called secondary structure and give idea about shape hydrogen bonding between two peptide chains. In this
of the conformation of the protein molecule. Depending conformation, the polypeptide chains lie side by side
upon the size of R groups, three major types of secondary in a zig-zag manner with alternate —R groups on the
structure (a-helix, b-conformation, b-pleated sheet and same side situated at fixed distances apart. The
triple-helix) have been identified. chains may be parallel or anti-parallel.
H Hydrogen bond In a parallel chain b-pleated sheet, the N-atoms point
H in the same direction, while in the antiparallel chain
H2 N C C b-pleated sheet, alternate chains are oriented in the
N
R1 O same direction. The anti-parallel structure permits
H H H H C R2 maximum hydrogen bonding. The b-conformation is
C C N
found in fibrous proteins.
N
R4
l Keratin protein (present in hair) has parallel
H O
C C b-pleated sheet structure while the silk protein,
C H
C N fibroin has anti-parallel b-pleated sheet structure.
O O R5
H R3 H H
H C CCH CCH
C C N O
C Hydrogen
H R7 O H R8 bond
H C N
N N
C C
R6 N C
O
a-helix
R groups
a-helix structure of proteins HCC CCH
(iii) Triple helix In this structure, three loosely coiled heterogeneous quaternary structure, e.g.
helical polypeptide chains can wind around each other haemoglobin which consists of two a chains and two b
to form a stiff cable. It is very strong and relatively rigid. chains.
The triple helix is found mainly in collagen, the major Polypeptide chain
structural protein of skin, bones, teeth, tendons and
cartilage. It can be seen that the triple helix structure is e
em
more extended and stabilised by hydrogen bonds Ha
Myoglobin
Ha
em
–N
e
–C a-helix
(iii)Derived proteins These are obtained by the Hence, mercury and lead are poisonous to the human
hydrolysis of higher proteins with acids, alkalies or system as they denature proteins in the body.
enzymes. The first aid treatment for a person who has ingested
e.g. Peptones, proteases and denatured proteins. a heavy metal is to give a large dose of egg whites or
milk, both of which are rich in proteins. The proteins
Denaturation of Proteins in them form complexes with the heavy metals in the
A protein that is in a biologically inactive form is said to stomach, temporarily preventing absorption of the
be in a denatured state. The conformational change that metals into the blood. The patient should later be
produces this state is called denaturation of proteins. given an emetic to get rid of the poison.
Denatured proteins usually forms large aggregates that
are precipitated from solution. This process is called Test for Proteins
coagulation. With the help of following tests, presence of proteins can
During denaturation no peptide bonds are broken, i.e. be detected by these methods.
chemical composition or primary structure remains (i) Biuret test Protein is gently warmed with
unaffected. 10% solution of NaOH and then a drop of dil. CuSO4
solution is added. Formation of reddish-violet
colour indicates the presence of peptide linkage
O
½½
(— C— NH—).
This test is also given by the compound biuret,
obtained by urea on heating.
(ii) Xanthoprotic test Certain proteins give yellow
Disulphide bridges colour with conc. HNO3 . This yellow colour is same
which is formed on skin when skin comes in contact
with conc. HNO3 .
The relatively weak, non-covalent interactions are
(iii) Millon’s test When Millon’s reagent (a solution of
disrupted in the denaturation of a protein.
mercurous and mercuric nitrates in nitric acid
Some following factors can bring about the denaturation containing some nitrous acid) is added to a protein
of proteins are solution, a white precipitate is obtained. On heating,
(i) Heat When you fry or boil an egg, you bring about a it turns to red precipitate or colour.
denaturation of egg proteins. That’s the reason why (iv) Ninhydrin test When a protein is boiled with a
bacteria are destroyed at high temperatures that exist dilute solution of ninhydrin, a violet colour is
in an autoclave is that their proteins are denatured. obtained. This test is given by all proteins.
(ii) Exposure to organic solvents Organic solvents (v) Nitroprusside test When sodium nitroprusside is
such as ethanol and rubbing alcohol can denature added to proteins containing —SH group, a violet
proteins. Alcohol is rubbed on the skin, before an colour is obtained.
injection to kill surface bacteria by denaturing
bacteria proteins and preventing infection.
5. Enzymes
(iii) Exposure to acid and bases Strong acids and
Kuhne (1878) coined the term enzyme. Buchner in
bases can denature proteins by disrupting salt bridges
(1897, 1903) isolated enzyme (including zymase from yeast
and hydrogen bonds. Prolonged treatment with strong
for the first time). Sunner found that enzymes are
acids will bring about hydrolysis of peptide bonds of a
proteinaceous. He crystallised the first enzyme, urease
protein.
from jack bean.
(iv) Exposure to salts of heavy metal ions Cation of
An enzyme is a specialised protein produced within
metals such as Hg2+ , Ag+ and Pb2+ interfere with the
an organism which is capable of catalysing a
disulphide bonds and salt bridges that stabilise the specific chemical reaction. Since, the enzymes act as
protein structure and bring about denaturation. catalyst, they are sometimes referred to as biocatalysts.
1142 JEE Main Chemistry
A catalyst alters the rate of a chemical reaction, (v)Isomerases These are catalyse reactions which bring
usually without undergoing any change itself. In this about intramolecular rearrangement of atoms in
respect an enzyme differs from a normal catalyst. The substrates.
enzyme may participate in a reaction by combining (vi) Ligases (Synthetases) These are catalyse reactions in
with the substrate. Ultimately, it is set free. which the pyrophosphate bond of ATP is broken down and
Some examples of enzymes along with the reaction, linkage takes place between two molecules. These
catalyse are given in tabulated form below enzymes form the following bonds : C—O, C—S, C—N and
Enzymes and their Reaction Catalyse C—C.
Enzymes Reaction catalyse Types of Reactions Shown by Enzymes
Amylase Starch to n glucose Enzymes Reactions
Maltase Maltose to (2) glucose Oxidoreductases Oxidation-reduction reactions
Lactase Lactose to glucose + galactose Transferases Group transfer reactions
Invertase Sucrose to glucose + fructose Hydrolases Hydrolytic reactions (addition of H2O)
Pepsin Proteins to amino acids Lyases Addition or loss of groups to double bonds
Trypsin Polypeptides to a-amino acids Isomerases Isomeration reactions
Urease Urea to ammonia + CO2 Ligases Synthesis by condensation of two groups requiring ATP
Nuclease DNA, RNA to nucleotides
Carbonic anhydrase H2CO3 to H2O + CO2
DNA polymerase Deoxyribonucleotide triphosphate to DNA
In another system of classification, the name of the enzyme is
RNA polymerase Ribonucleotide triphosphate to RNA
derived from its substrate.
e.g. Carbohydrases, proteases, dehydrogenases, oxidases,
decarboxylases, hydrases, isomerases, transferases, amidases
Nomenclature of Enzymes and esterases.
Enzymes are generally named by adding ase to the
root indicating the substrate on which the enzyme Mechanism of Enzyme Action
acts. This system was provided by Duclau (X) Lock and key and induced fit models both explain the
(1883). Thus, fumarase catalyses the conversion of enzyme specificity and its mechanism.
fumaric acid to malic acid.
In 1894, Fischer suggested a lock and key concept to
Classification of Enzymes explain the working of an enzyme. According to this
mechanism, an enzyme catalysed reaction involves the
The International Union of Biochemistry
following steps.
report of 1962 (revised in 1964) contains a scheme
for the classification of enzymes. Enzymes have been Step 1 Binding of enzyme (E ) to the substrate (S) to form an
divided into following six groups, viz. enzyme substrate complex.
(i) Oxidoreductases These are include a large E + S ¾® (ES )
number of enzymes (221 are listed). These are Step 2 Product formation in the complex.
bring about the main energy yielding reactions (ES ) ¾® EP
Enzyme substrate Enzyme product
of living tissue. Oxidoreductases include complex
oxidases and dehydrogenases. It act by
Step 3 Release of the product from the enzyme.
transferring electrons and hydrogen ions.
EP ¾® E + P
(ii) Transferases These are concerned with the Enzyme-product Enzyme Product
transfer of a group of atoms from one molecule to Key Enzyme
another. Oxidoreductases and transferases
together represent over half the enzymes
known. Substrate Enzyme Substrate
E+S ES complex
(iii) Hydrolases Complex molecules undergo cleavage,
and the elements of H 2O are added across the bond
cleaved by the action of hydrolases.
(iv) Lyases These may work in two ways.
A group of atoms may be removed from the Product
substrate leaving double bonds, or groups may Enzyme Substrate Enzyme Enzyme
molecule molecule substrate
be added to double bonds without hydrolysis, complex
oxidation or reduction. The enzymes act on the Lock and key model of enzyme action
following bonds :
In induced fit mechanism, the active site undergoes a
C—C, C — O, C — N, C — S and C — X
change in its conformation in presence of a substrate to allow
Bimolecules 1143
a better fit between the active site and the substrate. It Some enzymes require a loosely bound cation such
means that enzymes are highly specific for the reaction as Mg2+ .
that they catalyse. It is shown in below
Dn
Substrates
Reaction rate
Reaction rate
Enzyme substrate Product
Active site complex
Enzyme
+
Enzyme
4 6 8 10
Temperature C pH D
Features of Enzymes (C) Effect of temperature on the rate of enzymatic reaction. On
represents the point of thermal denaturation of the enzyme
Some important features of enzymes are discussed below (44-45°C). (D) Effect of pH on the rate of enzyme reaction.
(i) Specificity Enzymes show striking specificity.
These catalyse have specific reactions of specific (iv) Concentration Enzyme concentration affect the rate
substrates. Some enzymes are so specific that they of a reaction. If the substrate concentration is
catalyse only one type of substrate molecule. increased, the rate of enzyme reaction also increases.
Beyond a certain point, however, the enzyme becomes
e.g. The enzyme chymotrypsin catalyses the
saturated with substrate molecules. Further increase
hydrolysis of acetyl, L-phenyl-alanine methyl ester,
in reaction velocity occurs only if the enzyme
but is inert to the D isomer.
concentration is increased.
(ii) Required in small amount Only one enzyme can For example, during starvation the supply of the
catalyse a large number of substrate molecules. In substrate (glucose) decreases and glycolysis is
other words, enzymes are required in very small depressed. Conversely, increase in glucose
amounts. concentration accelerates the rate of reaction upto the
(iii) Activation energy Enzymes alter the speed of a point when enzyme is saturated with glucose.
chemical reaction. They lower the energy of activation (v) Inhibitors Certain compounds (e.g. drugs, poisons)
of a reaction, thus enabling it to occur at ordinary combine with an enzyme but do not serve as substrates.
physiological temperatures. They block reaction by the enzyme and function as
inhibitors. The inhibitors usually resemble the
A.E. A.E. substrate in structure. The enzyme and the inhibitor
Free energy
Free energy
Enzyme
inhibitor
complex
A Course of reaction B
Enzyme Inhibitor
Change in activation energy (A.E.) Inhibition
(A) Reaction without enzyme, (B) Reaction with enzyme. Mechanism of enzyme action inhibition.
l Inhibition may be competitive or non-competitive.
Factors Affecting Enzyme Activity In competitive inhibition, both inhibitor and
(i) Effect of temperature Enzyme action is greatly substrate molecules compete for binding with the
affected by temperature. If the temperature is enzyme. If the inhibitor is in sufficiently high
increased by 10°C, the rate of most chemical concentration, it displaces the substrate molecules. For
reactions is doubled. However, at 40-60°C, there is example, sulphanilamide is a competitive inhibitor for a
loss of enzyme activity because denaturation of bacterial enzyme that incorporates p-amino benzoic acid
proteins occurs at this temperature. into folic acid.
(ii) pH At optimum pH, the activity of enzyme is l Competitive inhibition can be reversed by increasing
maximum. For most enzymes, the effective pH the concentration of the substrate. In
range is 4–9. Below and beyond these limits, non-competitive inhibition, the inhibitors (poisons)
denaturation of enzymes takes place. The optimum react with the various functional groups of the
pH for pepsin is 2.0 and for trypsin is 8.0. enzyme. They inhibit the normal reactions catalysed
by the enzyme and result in death. Non-competitive
(iii) Ions Enzyme activity is affected by H + ion inhibition cannot be reversed by increasing the
concentration and other ionic concentrations. concentration of the substrate.
1144 JEE Main Chemistry
molecules of deoxyribose (a pentose sugar) and phosphate The four atoms of the ring are numbered 1¢ , 2¢ , 3¢ and
groups. 4’. The carbon atom of —CH 2 is numbered 5¢.
The two strands are intertwined in a clockwise direction, 5¢
HOH2C O OH
i.e. in a right hand helix, and run in opposite directions.
Each successive nucleotide turns 36 degrees in the 4¢ H H 1¢
horizontal plane. The width of the DNA molecule is 20 Å. H H
3¢ 2¢
The twisting of the strands result in the formation of OH H
deep and shallow spiral grooves. 2-deoxyribose sugar
20Å (ii) Nitrogenous bases are of two types, viz, pyrimidines
5¢ 3¢ Sugar phosphate chains
and purines. The pyrimidines are single ring
Base pairs compounds, with nitrogen in position 1 and 3 of a
G C 3.4 Å 6-membered benzene ring.
A T
T A G C The two most common pyrimidines of DNA are
A T S S
cytosine (C) and thymine (T). The purines are
34Å
S S N N N—H
P
A T O O O
T A A T N N N
S S
C G
G C H H H
Cytosine (C) Thymine (T) Uracil
(a pyrimidine base
5' 3' Pyrimidines present in RNA)
Double helix structure of DNA NH2 O
N N H
Chemical Composition of Nucleic Acids N N
Nucleic acids are biopolymers made of nucleotides joined
together to form a long chain. Hence, these are called N N N N NH2
polynucleotide. Each nucleotide consists of the pentose
sugar, deoxyribose, a phosphate group and nitrogenous H H
Adenine (A) Suanine (G)
base which may be either a purine or pyrimidine.
Deoxyribose and a nitrogenous base together form a Purines
nucleoside.
l Two purines would occupy too much space, while two
A nucleoside and a phosphate together form a nucleotide.
pyrimidines would occupy too little. Because of the
Nucleoside = deoxyribose + nitrogenous base
purine-pyrimidine pairing, the total number of
Nucleotide = deoxyribose + nitrogenous base +phosphate purines in a double-stranded DNA molecule is equal
= nucleoside + phosphate to the total number of pyrimidines.
Nucleotide may be represented as, l Thus, A / T = 1 and G/C = 1
Base l or, A + G = C + T (Chargaff’s rule).
O Sugar (iii) Phosphate group In the DNA strand, the
O phosphate groups alternate with deoxyribose. Each
HO—P phosphate group is joined to carbon atom 3 of one
OH deoxyribose and to carbon atom 5 of another.
(i) Deoxyribose is a pentose sugar with five carbon Thus, each strand has a 3 end and a 5 end. The two
atoms. Four of the five carbon atoms plus a single atom strands are oriented in opposite direction. The 3 end
of oxygen form a five-membered ring. The fifth carbon of one strand corresponds to the 5 end of the other.
atom is outside the ring and forms a part of a —CH 2 Consequently the oxygen atoms of deoxyribose point
group. in opposite directions.
1146 JEE Main Chemistry
Example 5. Which one of the following bases is not present with the same untill these are required. These RNA +
in DNA ? (JEE Main 2014) protein spherical balls are called informosomes.
(a) Quinoline Termination codon AAUAAA sequence
Poly (A) sequence
(b) Adenine Cap (AUG) (UAA) (20-200 nucleotides)
(c) Cytosine 5¢ 3¢
(d) Thymine Non coding region1 Coding region Non coding region 2
(10-100 nucleotides) (~1600 nucleotides) (50-150 nucleotides)
Sol. (a) DNA contains four nitrogenous pyramidine bases, Structure of m-RNA
adenine, guanine, cytosine, thymine. While quinoline is an
alkaloid, hence, it is not present in DNA. (ii) r-RNA It makes 80% of total cellular RNA. These
RNA is the basic constituent of ribosomes. It is
2. Ribose Nucleic Acid (RNA) developed from r-DNA in the case of prokaryotes
It is the genetic material of mainly viruses. It can be while in the case of eukaryotes, it is developed from
single stranded or double stranded. the nucleolar organiser region of chromosome.
The various r-RNAs present in different units of
Chemical Composition of RNA ribosome are as follows
RNA, like DNA is also a polymer of nucleotide which in Prokaryotes (70 S)
turn obtained from nucleoside, chemical which when
combines with phosphate. 30 S ¾®16 S r-RNA; 50 S ¾® 23 S and 5 S r-RNA
Here, the point of difference is that the sugar present in Eukaryotes (80S)
nucleoside is ribose sugar instead of deoxyribose sugar. 40S ¾®18 S r-RNA; 60 S ¾® 28-29 S, 5.85 S, 5 S
Nucleoside = ribose + nitrogenous base r-RNA
Nucleotide = ribose + nitrogenous base + phosphate Chloroplast and Mitochondria (55 S)
These are classified into 30S ¾® 12-13 S r-RNA; 40 S ¾®16-17 S r-RNA + 5 S
(i) Ribose The pentose sugar of RNA has an identical Structure of r-RNA is
structure with deoxyribose sugar except that there is
an —OH group instead of H on carbon atom 2¢ . Unpaired
5¢ bases
HOH2C O OH
4¢ H H 1¢
H H
3¢ 2¢
OH OH Coiled
Paired bases region
Ribose sugar
Uncoiled region
(ii) Nitrogenous base are divided into two types : Structure of r-RNA
pyrimidines and purines. Purine bases are same as
(iii) t-RNA It makes 10-20% of total cellular RNA with
that in DNA but pyrimidine bases are cytosine (C)
sedimentation coefficient of 3.8 S. These RNA
and uracil (U). (In RNA uracil replaces thymine).
contains 73-93 nucleotides with in the structure given
(iii) Phosphate is same as DNA. below
Note There are viruses, called retroviruses, in which Amino
information flows from RNA to DNA. The virus that causes acid Amino acid
binding site
ACC
The above structure is called clover leaf model and was (ii) DNA molecules can control the synthesis of proteins
fully worked out by Holley et al. of yeast alanine t-RNA. in an exact and specific way. Synthesis of a
The function of t-RNAs is to align the required amino polypeptide chain is controlled by a particular gene.
acids according to the nucleotide sequence of m-RNA. The gene, which is almost always a segment of a DNA
strand, transcribes an m-RNA which acts as an
intermediate in conveying information from the
The Genetic Code sequence of amino acids in the polynucleotide chain.
Nucleic acids control heredity on molecular level. The Each amino acid is specified by a sequence of three
double helix of DNA is reponsible for the hereditary bases known as codon of m-RNA.
information of the organisms. The information is stored
Each t-RNA molecules has a sequence of three
as the sequence of bases along the polynucleotide chain.
bases known as anticodon, which reads a codon of
DNA preserve the hereditary informations and use it.
m-RNA. t-RNA molecules thus serve as adaptors in
It done these things through two properties protein synthesis by reading of m-RNA codons in a
(i) DNA molecules can duplicate themselves (replication). sequence.
Practice Exercise
ROUND I Topically Divided Problems
Carbohydrates Which can be used to make distinction between an
1. The two functional groups present in a typical aldose and a ketose ?
carbohydrate are (a) I, II and III (b) II and III (c) I only (d) II only
(a) — OH and —COOH (b) —CHO and —COOH 6. If a-D-glucopyranose is reacted with acetic
(c) C == O and —OH (d) —OH and —CHO anhydride at 373 K, the major product is the
b-isomer of the pentaacetate. It is attributed to
2. Which is not true for carbohydrates?
(a) isomerisation of a-D into b-D-glucose at 373 K
(a) General formula is CnH2nOn
(b) opening of glucopyranose ring
(b) Glucose is the most common monomer of
(c) Both the statements are correct
carbohydrates
(d) None of the statement is correct
(c) Fructose is the sweetest of all sugars
(d) Do not conjugate with lipids 7. Number of stereo-centers present in linear and cyclic
structures of glucose are respectively (JEE Main 2019)
3. Identify the product ‘ C ’ in the following series of
reactions (a) 4 and 5 (b) 4 and 4 (c) 5 and 4 (d) 5 and 5
HCN
Glucose ¾¾® 2
A ¾¾®
H O
HI
B ¾¾® C
8. When glucose reacts with bromine water the main
product is
(a) heptanoic acid (b) hexanoic acid
(a) acetic acid (b) saccharic acid
(c) a-methyl caproic acid (d) None of these
(c) glyceraldehyde (d) gluconic acid
4. The two forms of D-glucopyranose obtained from 9. Which of the following statements is correct?
the solution of D-glucose are called [JEE Main 2020]
(a) isomer (b) anomer (a) Gluconic acid is obtained by oxidation of glucose
(c) epimer (d) enantiomer with HNO3
5. Consider the following reagents (b) Gluconic acid is a dicarboxylic acid
(c) Gluconic acid can form cyclic (acetal/hemiacetal)
I. Br 2 water II.
structure
Tollen’s reagent
(d) Gluconic acid is a partial oxidation product of glucose
III. Fehling’s solution