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Bioconductor unable to update 'curl'
curl
HELP
10 months ago
kagodwi2
• 0
0
votes
2
replies
1.2k
views
iam not able to do retrive data using GEOquery R package
HELP
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
ramya20kumar20
• 0
0
votes
9
replies
2.5k
views
'path' must be string
HELP
path
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
cpierce2
• 0
0
votes
1
reply
834
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.5 years ago by
DrFizz
• 0 • written 2.5 years ago by
melander
• 0
2
votes
6
replies
2.8k
views
Help me find the bug
DESeq2
HELP
3.0 years ago
Michael
• 0
0
votes
4
replies
2.8k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
Michael
• 0
0
votes
2
replies
1.3k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.3 years ago
michela
▴ 20
3
votes
4
replies
1.9k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3.3 years ago by
James W. MacDonald
68k • written 3.3 years ago by
michela
▴ 20
0
votes
10
replies
2.8k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
3.4 years ago • updated 3.3 years ago
michela
▴ 20
0
votes
1
reply
1.1k
views
Data visualization
HELP
Data
updated 3.5 years ago by
Guido Hooiveld
★ 4.1k • written 3.5 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
3.5k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 3.0 years ago by
Rodrigo
▴ 10 • written 4.0 years ago by
Jessica
▴ 10
1
vote
2
replies
3.6k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
4.3 years ago
lexi.kellington
• 0
1
vote
9
replies
7.5k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 3.7 years ago by
Sanatan
• 0 • written 4.8 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
2.4k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.9 years ago
hgalmoore
• 0
0
votes
1
reply
2.7k
views
setup microbiome error
help
software error
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
mafusa20
• 0
0
votes
2
replies
1.6k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
rm1238
• 0
1
vote
4
replies
8.2k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Mataivic
• 0
4
votes
5
replies
3.2k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 9.6 years ago by
Aaron Lun
★ 29k • written 9.6 years ago by
knipehf
• 0
0
votes
7
replies
2.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
9.7 years ago • updated 9.6 years ago
fischer87
• 0
0
votes
2
replies
1.8k
views
help me to analysis my data
limma
help
updated 10.2 years ago by
svlachavas
▴ 840 • written 10.2 years ago by
libya.tahani
• 0
20 results • Page
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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