Bioconductor Hclust

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dendrogram hclust textanalysis R RStudio

4.9 years ago • updated 4.8 years ago Abby ▴ 10

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2.2k

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deseq2 pca hclust

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Arindam ▴ 80

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2.6k

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hclust hierarchical clustering clustering weight

updated 8.6 years ago by Aaron Lun ★ 29k • written 8.6 years ago by danielle.newby • 0

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3.8k

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pheatmap hclust R dendrogram

8.7 years ago vd4mmind • 0

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2.1k

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WGCNA hclust

8.8 years ago bag59 • 0

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2.1k

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heatmap.2 hclust reorderfun

updated 9.0 years ago by James W. MacDonald 68k • written 9.0 years ago by b.nota ▴ 370

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2.2k

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clustering hclust maSigPro

updated 10.0 years ago by efejiroe • 0 • written 10.5 years ago by dimitri.leonid.lindenwald ▴ 50

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2.9k

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hclust heatmap

11.0 years ago rmgreer • 0

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4.9k

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wgcna dendrogram network hclust

updated 11.4 years ago by Keith Hughitt ▴ 180 • written 11.4 years ago by Jon Bråte ▴ 270

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4.5k

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wgcna hclust plotdendroandcolors dendrogram

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by Keith Hughitt ▴ 180

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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