Showing : champdata • reset
2
votes
10
replies
4.8k
views
Problem at champ.load
ChAMPdata ChAMP
updated 11 months ago by • 0 • written 2.8 years ago by • 0
0
votes
0
replies
726
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
15 months ago elgomez • 0
2
votes
7
replies
5.4k
views
Annotation for EPICv2
EpicV2 ChAMPdata
updated 15 months ago by • 0 • written 16 months ago by • 0
2
votes
4
replies
1.7k
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
0
replies
788
views
how to solve this error?
ChAMPdata ChAMP
2.0 years ago Meghana • 0
0
votes
2
replies
2.0k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 2.7 years ago by • 0 • written 5.0 years ago by • 0
0
votes
1
reply
1.4k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 3.9 years ago by • 0 • written 3.9 years ago by • 0
0
votes
3
replies
1.7k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 4.2 years ago by ▴ 780 • written 4.2 years ago by • 0
0
votes
3
replies
2.0k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
updated 12 months ago by • 0 • written 4.5 years ago by • 0
2
votes
1
reply
1.9k
views
How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 4.8 years ago by 4.3k • written 4.8 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
5.1 years ago • updated 5.0 years ago sissialva21 • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by Robert Castelo ★ 3.4k
Hi Gordon, thanks for giving your advice on how to use sample weights with GSVA scores. I have not used so far sample weights with GSVA sco…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
It looks to me that everything is working ok and limpa has done the right thing. You data has a lot of missing values, with the proportion …
Answer: Can sample-level weights be used when analysing GSVA scores in limma? by Gordon Smyth 53k
Yes, you could probably use the voom sample weights for an analysis of the GSVA scores for the same data, although I have never tried it. …
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160
You are correct. Thank you for noticing some of this 'pollution' with "_2" suffixes was unnecessary. I posted an updated SILVA classifier …
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Votes
A: The meaning of results produced by the bamQC function implemented in the ATACseq
The meaning of results produced by the bamQC function implemented in the ATACseqQC
A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Awards • All
Popular Question to Robert Castelo ★ 3.4k
Popular Question to minardsmitha ▴ 10
Popular Question to shepherl 4.3k
Popular Question to hauken_heyken ▴ 80
Scholar to Gordon Smyth 53k
Locations • All
Barcelona/Universitat Pompeu Fabra, 19 minutes ago
WEHI, Melbourne, Australia, 41 minutes ago
United States, 1 hour ago
The city by the bay, 1 hour ago
WEHI, Melbourne, Australia, 3 hours ago
Traffic: 1107 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6