Bioconductor Bed files

Showing : bed files • reset

votes

replies

3.1k

views

chip-seq granges R bed files

updated 7.6 years ago by spotifywebplayer • 0 • written 7.6 years ago by jinseok • 0

votes

replies

1.5k

views

parclip bedtools bed files gff3

8.1 years ago linuxborg2 • 0

vote

2.5k

views

bed files bedtools filtering chipseq

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by rbronste ▴ 60

votes

1.5k

views

cn.mops bed files getReadCountsFromBAM

8.6 years ago Pau Marc Muñoz Torres ▴ 20

votes

1.3k

views

bed files wavelet rna-seq

updated 8.8 years ago by shepherl 4.3k • written 8.8 years ago by whgsnp • 0

votes

1.9k

views

gene density bed files gff

9.5 years ago birdguy.saikat • 0

votes

replies

3.1k

views

rtracklayer import bed files

9.9 years ago jmr • 0

votes

replies

1.4k

views

fusion bed files gene fusion bed file

10.0 years ago ramaniak • 0

8 results • Page 1 of 1

Recent ...

Replies

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

Awards • All

Popular Question to Peter Hickey ▴ 760