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bayseq
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Help with baySeq paired data analysis - error running 'getLikelihoods'
baySeq
3.8 years ago
sharvari gujja
▴ 40
0
votes
1
reply
3.5k
views
PCA analysis with 2 biological replicates
bayseq
PCA
6.9 years ago
bsad
• 0
2
votes
2
replies
1.5k
views
Setting up Experiment Design in baySeq
bayseq
updated 9.4 years ago by
Thomas J Hardcastle
▴ 180 • written 9.4 years ago by
adityabandla
▴ 10
0
votes
5
replies
2.0k
views
baySeq pairedData error
bayseq
updated 9.8 years ago by
Thomas J Hardcastle
▴ 180 • written 9.8 years ago by
amab424
• 0
0
votes
0
replies
1.8k
views
baySeq missing data
bayseq
missing data
10.8 years ago
k.w.lau
• 0
1
vote
5
replies
3.6k
views
baySeq issues and questions
bayseq
metagenomics
11.3 years ago • updated 11.0 years ago
lordbleys
• 0
1
vote
2
replies
1.5k
views
more complicated hypotheses than differential expression (with baySeq or a similar package)
bayseq
hypotheses
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Will Landau
• 0
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Koji Kadota
▴ 10 • written 11.8 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.3k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Jianqiang SUN
▴ 10 • written 11.8 years ago by
Pankaj Agarwal
▴ 100
0
votes
2
replies
1.9k
views
Fwd: Paired Data Analysis in baySeq package
baySeq
baySeq
updated 12.0 years ago by
zhao shilin
▴ 60 • written 12.0 years ago by
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.3k
views
Paired Data Analysis in baySeq package
baySeq
baySeq
12.0 years ago
zhao shilin
▴ 60
0
votes
1
reply
1.5k
views
bayseq pair data
baySeq
baySeq
updated 12.4 years ago by
Thomas J Hardcastle
▴ 180 • written 12.4 years ago by
Guest User
★ 13k
0
votes
2
replies
3.3k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO
baySeq
GO
baySeq
13.0 years ago
Guest User
★ 13k
0
votes
2
replies
1.6k
views
weired bayseq results
baySeq
baySeq
13.2 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 116, Issue 8
baySeq
baySeq
13.4 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.1k
views
baySeq and samplesize factor
baySeq
baySeq
13.4 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
1
reply
4.6k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 13.5 years ago by
Gordon Smyth
53k • written 13.5 years ago by
Elena Sorokin
▴ 160
0
votes
3
replies
1.6k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
14.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.4k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
14.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.5k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
14.0 years ago
Tina Asante Boahene
▴ 100
0
votes
2
replies
1.7k
views
Help With RNA-seq
Annotation
Normalization
Kidney
edgeR
baySeq
Annotation
Normalization
Kidney
edgeR
baySeq
14.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
3
replies
1.8k
views
Help With RNA-seq
Normalization
edgeR
baySeq
Normalization
edgeR
baySeq
updated 14.1 years ago by
Valerie Obenchain
★ 6.8k • written 14.1 years ago by
Tina Asante Boahene
▴ 100
0
votes
1
reply
2.7k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 14.2 years ago by
Smith, Hilary A
▴ 40 • written 14.2 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.4k
views
TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Normalization
edgeR
baySeq
DESeq
Normalization
edgeR
baySeq
DESeq
14.2 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
2.6k
views
bayseq and edgeR for multi groups comparisons
edgeR
baySeq
edgeR
baySeq
14.2 years ago
Gordon Smyth
53k
0
votes
0
replies
1.6k
views
baySeq issues
edgeR
baySeq
edgeR
baySeq
14.5 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
1.5k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq
edgeR
baySeq
DESeq
RNASeq
edgeR
baySeq
DESeq
14.8 years ago
Gordon Smyth
53k
0
votes
2
replies
1.4k
views
Bayseq vignette is missing
baySeq
baySeq
updated 15.7 years ago by
Chao-Jen Wong
▴ 580 • written 15.7 years ago by
Naomi Altman
★ 6.0k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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shepherl
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