Showing : LFC • reset
0
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7
replies
2.3k
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LRT test followed by filtering based on LFC
deseq2 LFC LRT
written 7.0 years ago by • 0
1
vote
1
reply
1.4k
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM prior DESeq LFC
updated 3.7 years ago by 43k • written 3.7 years ago by • 0
0
votes
1
reply
1.8k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq LFC DEseq
4.7 years ago ayy2110 • 0
0
votes
6
replies
2.6k
views
large range of LFC in DESeq2
deseq2 lfc betaprior
updated 3.3 years ago by 43k • written 7.2 years ago by • 0
17
votes
7
replies
16k
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DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2 lfc coef contrast
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 10
6
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4
replies
3.7k
views
Identification of DEGs through limma analysis
limma microarray DEGs p values lfc
8.6 years ago rkp • 0
4
votes
14
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23k
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standard error value (lfcSE) returned by DeSeq2
deseq2 deseq lfc lfcse standard error
updated 8.9 years ago by • 0 • written 8.9 years ago by • 0
2
votes
1
reply
3.1k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray limma multiple treatments lfc
updated 9.8 years ago by ★ 29k • written 9.8 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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