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BioConductor
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Chip Seq Analysis of RNA Polymerase 2
ChIPseeker
ChIPSeqData
ChIPSeq
Bioconductor
written 8 days ago by
Gaurav
• 0
0
votes
1
reply
215
views
News:
The Call for Abstracts for BioC2026 is open!
Bioconductor
Conference
written 10 days ago by
laurah ondari
• 0
0
votes
1
reply
2.6k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
written 5.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
0
replies
146
views
News:
Deadline Extended: EuroBioC2026 Call for Abstracts
Bioconductor
Conference
13 days ago
laurah ondari
• 0
0
votes
2
replies
333
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 20 days ago by
LillianaVolkman99
• 0 • written 29 days ago by
Omer
• 0
0
votes
1
reply
166
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
written 27 days ago by
laurah ondari
• 0
0
votes
0
replies
375
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
4 weeks ago
srkingwu
• 0
1
vote
1
reply
198
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
written 4 weeks ago by
shepherl
4.3k
0
votes
1
reply
474
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 7 months ago by
Wei Shi
★ 3.6k
2
votes
3
replies
266
views
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 5 weeks ago by
Victor
▴ 10
0
votes
1
reply
334
views
News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
written 8 weeks ago by
laurah ondari
• 0
0
votes
1
reply
413
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
written 11 weeks ago by
laurah ondari
• 0
3
votes
5
replies
605
views
upstream git branches of bioc-release
Bioconductor
written 11 weeks ago by
Jeroen
▴ 10
0
votes
1
reply
477
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 11 weeks ago by
Kevin Blighe
★ 4.0k • written 7 months ago by
Sabina
• 0
0
votes
2
replies
579
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 10 weeks ago by
MarcHintz99
• 0 • written 4 months ago by
Rui
• 0
0
votes
2
replies
713
views
Problem with the TMB plot
Bioconductor
written 4 months ago by
nayanajose
• 0
2
votes
3
replies
627
views
DESeq2 design for haplotype MPRA
Bioconductor
written 4 months ago by
Rita
• 0
0
votes
0
replies
363
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 12 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
jalte.jelsing
• 0
0
votes
2
replies
338
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 12 weeks ago by
Guido Hooiveld
★ 4.1k • written 3 months ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
152
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
3 months ago
Maria Doyle
▴ 110
0
votes
2
replies
405
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 4 months ago by
sikora
• 0
1
vote
2
replies
537
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 3 months ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Joseph
• 0
1
vote
2
replies
527
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 3 months ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
nadia
• 0
2
votes
2
replies
680
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
4 months ago • updated 3 months ago
Matthew Thornton
▴ 390
0
votes
3
replies
331
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 3 months ago by
m.c.ruma
• 0
1
vote
4
replies
498
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 12 weeks ago by
RalphSavage99
• 0 • written 3 months ago by
jessica.anderson
▴ 10
0
votes
1
reply
277
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 3 months ago by
Michael Love
43k • written 4 months ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.2k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 3.0 years ago by
Maria Doyle
▴ 110
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
3 months ago
residentialplayt
0
2
votes
1
reply
826
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 3 months ago by
shepherl
4.3k
0
votes
1
reply
602
views
News:
Save the Date: BioC2026
Bioconductor
written 3 months ago by
shepherl
4.3k
0
votes
3
replies
303
views
Using DESeq2 for age prediction
Bioconductor
updated 3 months ago by
ATpoint
★ 5.0k • written 3 months ago by
picasa1983
• 0
4
votes
3
replies
665
views
DESeq2 for candidate gene analysis
Bioconductor
written 4 months ago by
piffelpaff
▴ 20
0
votes
3
replies
383
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
4 months ago
ubjw24
• 0
0
votes
3
replies
525
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
4 months ago
Gabriel
• 0
0
votes
1
reply
216
views
Gatins Set error
flowCore
Bioconductor
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
yoav.lubelsky
• 0
0
votes
1
reply
285
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 4 months ago by
s.samarajiwa
• 0
0
votes
1
reply
1.1k
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 5 months ago by
shepherl
4.3k
1
vote
2
replies
401
views
Error Loading Experiment from SimBenchData Package
Bioconductor
4 months ago
ksankaran
• 0
0
votes
3
replies
449
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 4 months ago by
Aaron Lun
★ 29k • written 4 months ago by
Stephen Piccolo
▴ 600
0
votes
6
replies
774
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
Skyler
• 0
0
votes
1
reply
245
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 4 months ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
434
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 7 months ago by
shepherl
4.3k
0
votes
3
replies
2.6k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 7 months ago by
Gordon Smyth
53k • written 7 months ago by
anni
• 0
0
votes
2
replies
1.1k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
Ramiro
• 0
0
votes
9
replies
14k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 8 months ago by
Hadi
• 0 • written 4.5 years ago by
charlotte
▴ 10
0
votes
0
replies
399
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
8 months ago
Gordon Smyth
53k
0
votes
4
replies
9.4k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.4 years ago by
Aytaç
• 0
0
votes
2
replies
656
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 5 months ago by
Liona
• 0 • written 8 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
583
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 9 months ago by
ATpoint
★ 5.0k • written 9 months ago by
yob4003
• 0
919 results • Page
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Replies
Comment: Pathway abundance data from Curatedmetagenomics
by
yesquokkan
• 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Erik Wright
▴ 160
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Votes
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
Answer: Can you colour dendrogram branch clusters in pheatmap?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
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