Open Source Python Scientific/Engineering Software for Linux

An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below.

This project aims to provide software usefull in automation tasks like building automation. Different backends are supported like KNX or OpenHAB. Note: The project has moved to GitHub. Please consult: https://github.com/CometVisu/CometVisu - for the CometVisu https://github.com/OpenAutomationProject - for the different OpenAutomation subprojects

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation.

In Green Cloud here is a central global server which does the work of global database management along with providing complex analysis services for the users (farmers, scientists) through the client machines and the public access web portal. The existing agricultural databases throughout the world can also be used for inference purposes and their data may also be updated by our server. The meteorological servers can be accessed for climate data.This server-client architecture mandatory in present and even near-future circumstances as the client machine has to be low-power and low-cost for the feasibility of the system in Indian context. Therefore, the complex analysis (Expert system analysis in accordance with world-wide data) has to be done on server. The environment data is collected via sensors is uploaded to the website

This project aims to provide an open source fleet management system with special focus on modularity and integration.

PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. These informative variants have been established by comparing allele frequencies between strain-types using ancestral node comparisons and FST measures of population differentiation.

Open Source Web-based Application for System & Software Requirement Management and Traceability

Researches have shown that immediate feedback can increase energy saving dramatically. YoMo aims to empower people using low-cost open hardware smart meters in their household. The metering system consists of a coordination unit, a raspberry pi, and several smart meters, arduino boards equipped with communication shields and our self-designed yomo metering shield. The smart meters are attached to household devices and monitor their energy consumption. The gathered data is timestamped and transmitted to the coordination device. This device offers interfaces to control the smart meters. On top of the software runs a apache webserver that provides all estimated data on our yomo project homepage. The system does not need any maintenance and works out of the box after the devices were integrated into the households Wi-Fi network. Link to the scientific paper: http://link.springer.com/article/10.1007%2Fs00450-014-0290-8#/page-1

polyglot framework using Python/C++/JavaScript to fast develop applications to analyze biological sequences

This program is a web application to collect and organize data of text analysis. It works with sets of texts and the analysis are done on portions of the length of a sentence. One of the preprocessing modules is based on CoGroo (A LibreOffice & OpenOffice.org Portuguese Grammar Checker).

Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).