Search Results for "pdf data mining"
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Showing 83 open source projects for "pdf data mining"
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ProM is the comprehensive, extensible framework for process mining. Process Mining deals with the a-posteriori analysis of (business) processes using enactment logs.
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TabuVis
An Interactive Visualisation for Tabular Data
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. The project is available at: http://staff.scem.uws.edu.au/~vinh/projects/TabuVis/ Related publications: https://www.sciencedirect.com/science/article/pii/S2468502X20300358 https://dl.acm.org/doi/pdf/10.1145/2968220.2968248 https://link.springer.com/content/pdf/10.1007/s11432-013-4870-1.pdf https://dl.acm.org/doi/pdf/10.1145/2397696.2397705 -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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JaxoDraw
JaxoDraw: Feynman Diagrams made easy!
JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures. -
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UnBBayes
Framework & GUI for Bayes Nets and other probabilistic models.
UnBBayes is a probabilistic network framework written in Java. It has both a GUI and an API with inference, sampling, learning and evaluation. It supports Bayesian networks, influence diagrams, MSBN, OOBN, HBN, MEBN/PR-OWL, PRM, structure, parameter and incremental learning. Please, visit our wiki (https://sourceforge.net/p/unbbayes/wiki/Home/) for more information. Check out the license section (https://sourceforge.net/p/unbbayes/wiki/License/) for our licensing policy. -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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DataMelt
Computation and Visualization environment
DataMelt (or "DMelt") is an environment for numeric computation, data analysis, computational statistics, and data visualization. This Java multiplatform program is integrated with several scripting languages such as Jython (Python), Groovy, JRuby, BeanShell. DMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. ... -
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Divide and Conquer Treemaps
Divide and Conquer Treemap Visualisation
The project develops new new techniques and algorithms for quickly partitioning and visualizing very large hierarchical structures within a variety of arbitrary shapes and space using Divide and Conquer approach for Treemaps. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1500066X https://dl.acm.org/doi/pdf/10.1145/2493102.2493112 -
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. ... -
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ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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DynaQ
Innovative text document search. http://dynaq.opendfki.de for details.
The goal of DynaQ is to develop an inquiry system to explore the personal information space, supporting you with the searching paradigm 'orienteering'. DynaQ is a (desktop)search engine with enhanced functionality for file, email and blog search. Look at our GitLab homepage for sourcecode and documentation: http://dynaq.opendfki.de -
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VIKAMINE is a flexible environment for visual analytics, data mining and business intelligence - implemented in pure Java. It features several powerful visualization and mining methods, and can utilize background knowledge.
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Open Source Data Quality and Profiling
World's first open source data quality & data preparation project
This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data... -
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gt-jdbc-korean
Korean Spatial DBMS Driver
The Development of Domestic Spatial DBMS Driver supporting java based Open Source GIS(GeoServer, uDig) ● Manual: - https://sourceforge.net/projects/gt-jdbc-korean/files/GeoServer-uDig_KoreanSpatialDBMS_Manual_ko_v.1.0.pdf ● DataStore plugins: - Altibase Plugin( http://www.mangosystem.com:8080/gxt/docs/data/database/altibase.html ) - Tibero Plugin( http://www.mangosystem.com:8080/gxt/docs/data/database/tibero.html ) - Kairos Plugin( http://www.mangosystem.com:8080/gxt/docs/data/database/kairos.html ) - NGI format - ESRI Personal GDB License :: OSI-Approved Open Source :: GNU Library or Lesser General Public License version 2.0 (LGPLv2) -
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RigolDso
Rigol (DS1052E) HMI
Get, record, display and save DSO data. RigolDso is a Java application that is useful to get data from a Rigol DS1052E digital oscilloscope. The idea is about to use the DSO for get measure (without PC control) and then easily and fastly transfer data to PC (USB) for documentation of a project. You can show data and parameters about measures save them in CSV files or (in future) bitmap, pdf, ps. -
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GMOL
A tool for 3D genome structure visualization
...It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project is supported by the National Science Foundation (grant no. DBI1149224). If you use GMOL in your research, please cite: Nowotny, Jackson, Avery Wells, Oluwatosin Oluwadare, Lingfei Xu, Renzhi Cao, Tuan Trieu, Chenfeng He, and Jianlin Cheng. ... -
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gvSIG CE (Community Edition)
The full-featured, easy-to-use desktop GIS with real processing power!
The Community Edition (gvSIG CE) is a fork of the gvSIG desktop GIS project (http://www.gvsig.org). It is open to external contributors and fully community-driven. Our official releases are designed to be portable and include all necessary binaries for Linux, Mac OS X and Windows. No installation necessary: Just download, unpack and run! -
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...HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858
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Mapyrus is software to plot Geographic Information System data to PostScript, PDF, SVG and web image files. Mapyrus combines a BASIC-like scripting language, reading GIS datasets and running as either a utility program, a Java Servlet, or as a webser
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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MYRA
A collection of ACO algorithms for the data mining classification task
MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. -
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Lattice Miner is a data mining prototype for creating, visualizing and exploring concept (Galois) lattices. It allows the generation of formal concepts and association rules.
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Molecular Simulation Grid
Provides high performance computing power and state of the art tools
MoSGrid focuses on the configuration and provision of Grid services for molecular simulations and annotation of the results with metadata and their provision for data mining and knowledge generation. It is based on Liferay technology togethe with gUSE. -
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GUI Ant-Miner is a tool for extracting classification rules from data. It is an updated version of a data mining algorithm called Ant-Miner (Ant Colony-based Data Miner).
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Lab Inventory
Rediscover the Simplicity www.atgclabs.com
Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory...
