Showing 21 open source projects for "institute"

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  • 1

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...
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    Downloads: 456 This Week
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  • 2
    DkIT Bridge Designer

    DkIT Bridge Designer

    Dundalk Institute of Technology Virtual Bridge Design Competition

    The DkIT Bridge Designer will provide you with a realistic introduction to engineering through an authentic, hands-on design experience. This software provides you with the tools to model, test, and optimize a steel highway bridge, based on realistic specifications, constraints, and performance criteria. Supported by Dundalk Insititute of Technology and All-Island Funds, this is a virtual bridge designer that allows kids of all ages learn about engineering and compete with their classmates!
    Downloads: 5 This Week
    Last Update:
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  • 3

    SimpleLemmatizer

    This program is for text lemmatization

    It lemmatizes texts based on supplied model. The base model is for slovak texts and is created from Slovak National Corpus, copyright by Ľ. Štúr Institute of Linguistics, Slovak Academy of Sciences
    Downloads: 0 This Week
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  • 4
    PLEASE NOTE THAT THIS PROJECT HAS FINISHED. THE FILES ARE HERE AS AN ARCHIVE. MDV: XML data management and presentation framework. For download and instructions please go to mdv.sourceforge.net.
    Downloads: 0 This Week
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  • 5
    Silent Mantis

    Silent Mantis

    Event recorder software for animal and human behaviour research.

    ...It can be used in animal or human behavioral research to manually record any animal or human bevavioral states or events from a video file. The results can be exported into text files for statistical evaluation purposes. SM was developed by Peter Szabo at the Institute of Biology of the University of Veterinary Medicine in Budapest, Hungary. It is distributed under the terms of the GNU General Public License. The current stable version is 0.2.
    Downloads: 1 This Week
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  • 6
    Jillion
    Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
    Downloads: 0 This Week
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  • 7
    PMM-Lab

    PMM-Lab

    Predictive Microbial Modeling plug-in for KNIME

    ...Users can apply PMM-Lab to proprietary or public data and create bacterial growth / survival / inactivation models. The framework can easily be extended to other model types, e.g. growth/no-growth boundary models. PMM-Lab has been initiated and provided by the Federal Institute for Risk Assessment - BfR (Berlin, Germany). The software is in Beta status. Before using the software you have to read and accept the license and disclaimer (https://sourceforge.net/p/pmmlab/wiki/Disclaimer/). If you do not agree, do not use this software.
    Downloads: 0 This Week
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  • 8
    HHS Digital Media API Platform

    HHS Digital Media API Platform

    Syndicate text and multimedia content with this API and storefront.

    ...The Centers for Disease Control and Prevention (CDC) and the Department of Health and Human Services (HHS) Assistant Secretary for Public Affairs office (ASPA) developed these APIs in collaboration with the Food and Drug Administration’s (FDA) Center for Tobacco Products (CTP). The CDC, FDA/CTP, HHS/ASPA, and the National Institute of Health’s National Institute for Allergy and Infectious Diseases (NIH/NIAID) use these platforms. https://syndication.hhs.gov http://tools.cdc.gov http://tools.niaid.nih.gov http://tools.fda.gov
    Downloads: 1 This Week
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  • 9
    Specview is a Java GUI_based application for 1-D spectral visualization and analysis of astronomical spectrograms generated by a variety of observatories and instruments. Note that we no longer provide file distributions of this software. You are encouraged to visit the specview web site download page: http://www.stsci.edu/institute/software_hardware/specview/download to retrieve an installer appropriate for your platform.
    Downloads: 2 This Week
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  • 10
    Anteater

    Anteater

    Annotation Tool to Extract Endangered Animals from Text Resources

    The goal of this project is the extraction the information listed below from texts downloaded from the Federal Register (https://www.federalregister.gov). The texts are mainly applications for permits, notices about given permits, etc. This software tool is developed by the Max Planck Institute for the History of Science (http://www.mpiwg-berlin.mpg.de) in collaboration with Dirk Wintergrün and Etienne Benson.
    Downloads: 0 This Week
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  • 11
    ImageJforXTF

    ImageJforXTF

    Open source software for processing XTF files

    This project was born from a stage at the "Signals and Images Lab (si.isti.cnr.it), Institute of Information Science and Technologies of the National Research Council of Italy". ImageJforXTF extends the open source ImageJ software with functionalities that allow to open and manage XTF files. This kind of files is used to record sonar and bathymetric data. An user can choose to open any file with extension ".xtf" so that the program parses it and shows the resulting image.
    Downloads: 1 This Week
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  • 12

    mPSQed

    Alignment editor and multiplex pyrosequencing assay designer

    ...The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be differentiated is high. One extremely useful but underused method for this purpose is the multiplex pyrosequencing technique. mPSQed is a program developed at the Robert Koch Institute and targeted at facilitating the creation of such assays.
    Downloads: 0 This Week
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  • 13
    Populating Research Data Australia (RDA) with collection descriptions of Australian-related biomolecular data held in the European Bioinformatics Institute (EBI) databanks. This project is ANDS-funded through the DIISR Education Infrastructure Fund.
    Downloads: 0 This Week
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  • 14
    ROS repository for human-robot engagement package, developed at Worcester Polytechnic Institute. Currently contains ROS stack for recognizing and generating connection events. This work is supported by the NSF awards IIS-0811942 and IIS-1012083.
    Downloads: 0 This Week
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  • 15
    ClimateTrends is an information and analysis tool on global climate change developed by the World Resources Institute. ClimateTrends provides a comprehensive and comparable database of greenhouse gas emissions data.
    Downloads: 0 This Week
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  • 16
    This software is related to ST-Guide project, an initiative arisen at the Institute of Computing of State University of Campinas (IC-UNICAMP) to solve the practice guideline formalization and implementation problems.
    Downloads: 0 This Week
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  • 17
    AvroraZ is the branch of Avrora from the Cork Institute of Technology, Cork, Ireland aimed at improving MicaZ support thus enabling IEEE 802.15.4 compliant emulations
    Downloads: 0 This Week
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  • 18
    The Swiss Protein Identification Toolbox (swissPIT) is a project at the Swiss Institute for Bioinformatics (SIB) in Geneva which aims at the development of an automated analysis system to identify proteins using MS and MS/MS based data.
    Downloads: 0 This Week
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  • 19
    The purpose of the project is to develop a quantitative medical imaging & visualization program for use on brain MR, DTI and MRS data. It is a joint project of the Kennedy Krieger Institute & the Johns Hopkins University, Psychiatric Neuroimaging Lab
    Downloads: 4 This Week
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  • 20
    SAAT Semi-Automated Annotation Tools
    SAAT Semi-Automated Annotation Tools The Medical University Graz, in cooperation with the Fraunhofer Institute for Biomedical Engineering IBMT is developing the SAAT - Semi-Automated Annotation Tools in the CRIP context.
    Downloads: 0 This Week
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  • 21
    Predictive Networks

    Predictive Networks

    Web application providing analysis of biomedical relationships.

    ...Built using the Grails web application framework (http://grails.org/) with MySQL (http://www.mysql.com/) as a back-end datastore and utilizing R (http://www.r-project.org/) for statistical analysis. Developed by the Dana Farber Cancer Institute (http://compbio.dfci.harvard.edu/) and Entagen (http://www.entagen.com).
    Downloads: 0 This Week
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