Search Results for "bioinformatics"
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Showing 5 open source projects for "bioinformatics"
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miRprimer
Automatic design of primers for miR-specific RT-qPCR
miRprimer designs primers for PCR amplification of microRNAs as described (Busk (2014). A tool for design of primers for microRNA-specific quantitative RT-qPCR. BMC Bioinformatics. 15, 29) for use with the method miR-specific RT-qPCR (Cirera, S., and Busk, P.K. (2014). Quantification of miRNAs by a simple and specific qPCR method. Methods in Molecular Biology. 1182, 73-81.). The program was written in Ruby and is available as source code for developers and as an .exe file for easy use. -
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The SPELL gene expression explorer searches multiple datasets for related gene expression patterns. Hibbs MA, et al. Exploring the functional landscape of gene expression: Directed search of large microarray compendia. Bioinformatics, 2007.
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Object oriented software classes and programs implemented in multiple software languages for biological informatics and bioinformatics applications.
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Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
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BioWSR
Bioinformatic Web Services Registry
In bioinformatics, and in general life sciences, there are plenty of web services built following the different web service paradigms and bioinformatic web service variants: REST, SOAP, BioMOBY, DAS, BioMart, etc... Although there are already web service repositories like BioMOBY and web service catalogues like BioCatalogue or DASRegistry, we feel that many of the existing solutions are not extensible enough to be applied to new web service paradigms.
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