Search Results for "tools + java"
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Showing 15 open source projects for "tools + java"
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Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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SIGAR (System Information Gatherer and Reporter) is a cross-platform, cross-language library and command-line tool for accessing operating system and hardware level information in Java, Perl and .NET.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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Debian Unstable/testing alpha.
Pre-Alpha Console distro for high performance Linux computing.
...Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full optimized perl support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. (git pull, builders) * i915 latest support drivers and gallium. * Kernel patching, testing featurettes * Wi-Fi and bluetooth ipv4 support * Latest GCC versions * Qt, Java, Maven, Desktop improvements Notes ==== Basic Console Pre-alpha build Test and rate for improvemen -
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Tikal's open source Application Development & Deployment is comprised of fully integrated suites that cover the entire software life-cycle, include tools for development and deployment of applications, software configuration management and ASQA.
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Build scripts/wrappers around the YUI Compressor implemented for popular languages like PHP, Python, Java, Bash, Perl, etc. The scripts will track down and compress all JavaScript and CSS files within a given project tree.
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DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
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Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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FLOSSmole (formerly OSSmole) is a set of tools for gathering metrics and publishing analyses about development of free/libre/open source projects. UPDATE: Our data is now released to Google Code. Please see our new home page at http://flossmole.org
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The SERF Tools are programs and snippets of code made to speed-up and ease development. Most of these programs were written as proof-of-concept but have proven useful at least twice.
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ACDK - Artefaktur Component Development Kit - is a platform independent C++-framework similar to Java or C#/.NET for generating distributed and scriptable components and applications.
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Not the greatest thing since Sliced Bread, it IS Sliced Bread. This project is a series of network tools and a network development SDK, with big hopes, and too little time to code it all.
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The Snake Skin Bean Breaker converts Python syntax into readable Java syntax. With a high potential of runtime or compile-time deviances, the resultant code is assumed to be broken.. Works well for porting Jython Swing prototypes.
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