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CometAnalyser, for quantitative comet assay analysis.
Description:
Comet assay provides an easy solution to estimate DNA damage in single cells through microscopy assessment. To obtain reproducible and reliable quantitative data, we developed an easy-to-use tool named CometAnalyser. CometAnalyser is an open-source deep-learning tool designed for the analysis of both fluorescent and silver-stained wide-field microscopy images. Once the comets are segmented and classified, several intensity/morphological features are automatically exported as a spreadsheet file.
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...It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a singlefile can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess.
EigenMS is a normalization method implemented in R (and older version in Matlab) available as a set of two functions that should be used in a sequence.
Please download EigenMS.zip file (latest version).
Latest version uploaded in October 2017 has a bugfix for single treatment group normalization.
Rescaling has been omitted from 2015.
EigenMS utilizes SVD to detect bias trends in the data and eliminates them. EigenMS eliminates effects from known and unknown factors and can be utilized for any -omic platform.
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A lightweight, simple and easy to use embedded system task scheduler. RataOS is written as a high level C, with a simple HAL & API structure, allowing it to be ported between embedded devices easily.
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