Search Results for "parallel computing"
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Showing 41 open source projects for "parallel computing"
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PMCGPU
Parallel simulators for Membrane Computing on the GPU
Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g. -
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CUPBB
A Compute Unified Parallel Building Blocks Library Using GPU Computing
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neuranep
Neural Network Engineering Platform
A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. NeuraNEP emulates a distributed processing environment capable of handling millions of microthreads in parallel, for example running neural networks with millions of spiking cells. Microthreads are general processing elements that can also represent non-neural elements, such as cell populations, extracellular space, emulating... -
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mapgraph
Massively Parallel Graph processing on GPUs -- now part of Blazegraph
Mapgraph is SYSTAP’s disruptive new technology to exploit the main memory bandwidth advantages of GPUs. The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: ... -
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Fast Matrix for Java
General purpose matrix utilities for Java in Parallel Computing
Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors. -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems. -
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corunner
A utility to transport files and execute at remote in prarallel
Are you maitaining many machines and bored with the tedious operation of logging to those machines one by one just for checking the machine's status? Or are you losing patient for your simple script that have to run command in those machines in sequence? The corunner is just for those senarios. It's designed to speed up execution in your machines. It can executes command in handreds of or thousands of machines concurrently. Provide it with your files and command and the machines' location,... -
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ... -
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Simuquant
A quantum circuit simulator written in Scala
Simuquant is made to construct and simulate universal quantum circuits. It's GUI enables intuitive access and direct graphical feedback, making it useful in a classroom situation and the like. Simulation processing is done in parallel, utilizing parallel collections introduced in scala 2.9. This application has been created as part a bachelor-thesis at the Hamburg University of Applied Sciences. The thesis is available... -
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PyDSH is a remote administration tool, consisting of pydsh and pydcp. Pydsh allows you to run a command on multiple hosts in parallel over RSH, SSH or Telnet, OR manage your SSH public keys. The pydcp command allows copying files to/from multiple hosts.
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SECTOR: A Distributed Data Storage and Processing Platform
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Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
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libCL is an open-source library for high performance computing in OpenCL. The goal is to provide a comprehensive repository of parallel algorithms and data structures for visual-centric computing.
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Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for data analysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming
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HadoopDB is a hybrid of parallel database and MapReduce technologies. It approaches parallel databases in performance and efficiency, yet still yields the scalability, fault tolerance, and flexibility of MapReduce systems.
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GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.
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RT-BOINC stands for a Real-Time BOINC. It was designed for managing highly-interactive, short-term, and massively-parallel real-time applications. We implemented RT-BOINC on top of the recent BOINC server source codes.
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Roomy is a programming language extension for writing parallel disk-based applications. All details of parallelism and disk I/O are hidden within the Roomy library.
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PyMW is a Python module for parallel master-worker computing in a variety of environments. With the PyMW module, users can write a single program that scales from multicore machines to global computing platforms.
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Parallelizable is a tiny framework in complement for java.util.conccurent api. Parallelizable is an abstract class to extend for making asynchronous parallel execution on a synchronous task. Very usefull if task often calls a very long process.
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Numerical package Parallel EXECution. Using a numerical package like Octave, 'npexec' distribute computation of a math formula among various network elements, collecting result automatically. ->y=npexec('fft(x.^m)', 'm=-8:8','x=ARG');
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Pydusa is a package for parallel programming using Python. It contains a module for doing MPI programming in Python. We have added parallel solver packages such as Parallel SuperLU for solving sparse linear systems.
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pRPL is a general-purpose parallel Raster Processing C++ programming Library. It enables the implementation of parallel raster-based algorithms without requiring a deep understanding of parallel computing, and greatly reduces the development complexity.
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