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Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files.
The binding site regions are extracted using grid based scheme.
For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
"Open SysAME" stands for Open-source Systems Analysis and Modeling Engine. Using the concepts developed by Dr. John Warfield (Interactive Management) and George Chandy (OPMS), Open SysAME facilitates collaborative modeling and analysis of systems.
The Athlete is a virtual robot living in the ODE (Open Dynamics Engine)world. An evolution algorithm is implemented based on the DR-EA-M to optimize its performances. This involves a Genetic algorithm, network of neurons and morphology. All is in java.
The Semantic Server is a Python-based set of tools that allow for better management, analysis, and integration with other systems. It uses the A.L.I.C.E. chatbot technology by Dr. Richard Wallace.