Search Results for "md"
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Showing 18 open source projects for "md"
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Cave Story MD
A fan port of Cave Story for the Sega Mega Drive
This is a rewrite/port of the popular freeware game Cave Story for Sega Mega Drive/Genesis. It should work on any console or emulator. The main story is "finished", only little things and bugfixes remain. A fan port of Cave Story for the Sega Mega Drive. -
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atomes
Analysis, visualization, edition of 3D atomistic models
...atomes is a toolbox developed to analyze, to visualize and to create/edit three-dimensional atomistic models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research engineer for the CNRS Dr. Sébastien Le Roux works at the Institut de Physique et Chimie des Matériaux de Strasbourg. -
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array-info is a tool to retrieve informations and logical drives status from several RAID controllers (currently Compaq IDA and CISS, and MD).
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http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.
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PUPIL (Program for User Package Interface and Linking), is a software environment that allows developers to link quickly and efficiently together multiple pieces of software in a fully automated multi-scale simulation. More specifically, it supports QM/MM MD simulations where the user might choose among any of the different MD engines and QM engines, which are connected to PUPIL as external programs through a tiny specific interface. One of the main advantages here is that the user can use most of the functionalities that may have those external programs interfaced without the necessity to be reimplemented again on independent interfaces. ...
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Molecular Dynamics Studio
Molecular Dynamics Cell Construction
...NanoEngineer-1 is a molecular CAD software written by Nanorex and provides the user an easy way to create molecules, while the software modifications allow the user to type atoms using multiple force fields. PACKMOL can generate a random collection of molecules using the molecule templates from NanoEngineer-1 thus providing the initial MD cell. Modifications to PACKMOL allow the atom type data to be passed through to the MSI2LMP software. MSI2LMP creates a LAMMPS input file based on class I or class II force fields. MSI2LMP was modified to use numerically coded force field data generated by NanoEngineer-1. The MMP file format was extended and integrated into all three software applications. ... -
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usb-md
modified Linux USB driver kernel module
modified USB driver for teaching purpose -
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dtime Decimal Time Library
Decimal time library for Linux/*nix
The dtime library is a project aimed at providing a set of decimal (metric) time replacement functions for the standard *nix time functions, allowing programmers to easily develop programs that work with decimal times. Decimal time systems divide the day into segments based on 10. Examples units are centidays (cd), millidays (md), and microdays (ud). -
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Iphigenie
A fast and versatile molecular dynamics program
The molecular mechanics (MM) program Iphigenie provides a broad range of molecular dynamics (MD) methods and technologies, including polarizable force fields (PMM), the HADES reaction field, and QM/(P)MM hybrid simulations. -
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Molecular Dreams
C++ High level framework thinked for javascript
Molecular-Dreams permits to develop applications of all kinds, using C++ and/or simply Javascript code; basically, Md makes a simple abstraction of varoius complex-works-flow around QObjects and associates. Md proposes a HighLevel RDBMS based on QtSQlite driver, adding something to it! It also will make an using-abstraction of various C libraries as RtAudio, Ogg, Vorbis, Speex, Flac and LibAv. Molecular-Dreams was developed on Linux, but it could be easily ported to other platforms, as MacOSX, Windows, Android and others. ... -
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LORE
Another RAID Driver for Linux
LORE (Layer Of Raid Engine) is a software RAID driver for Linux like MD. LORE delivers better performance than MD in various worklaods. -
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grcarma
A Tk frontend to MD trajectories analysis program carma
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This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket. Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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growlight
Storage management and system installation tool
Growlight facilitates management of all storage devices known to the Linux kernel, from hardware RAIDs to hybrid media to ramdisks to ZFS (indeed, Growlight was initially written to simplify ZFS on Linux). It understands the majority of partition and filesystem types, as well as both software and hardware RAID, LVM, and encrypted disks. -
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ODD is a tool for optimal domain decomposition of atomic structure guided by the given molecular dynamics data.
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NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...
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This xmms-plugin strives to take care of all aspects of minidisc recording on Sony decks. It sets track marks, and adds track titles while recording. The idea is to pop a disc into your deck, hit play in xmms and the rest takes care of itself.
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md-utils
Utilities to analyze molecular dynamics data
md-utils is a set of command line tools written in C designed to perform certain operations and analysis on the molecular dynamics data. The supported operations involve trajectory coordinate transformation to the COM system, Cartesian coordinate transformation to selected internal coordinates and to projected normal mode coordinates, trajectory merging, selecting subsets of trajectory frames, selecting subsets of atoms, permuting atoms, etc.
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