Search Results for "r programming" - Page 4
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Showing 124 open source projects for "r programming"
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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GPMfit
Gaussian Process Model Fitting
Gaussian Process model for fitting deterministic simulator output. Establish efficient and reliable likelihood optimization through hybridized DIRECT-BFGS and multi-start BFGS algorithms. Programming Language: Matlab. -
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(RoboSim) Robot Simulator
(RoboSim) Java based Robot Localization and Path Planner Simulator.
Java based portable simulator to visualize and understand the Robot Localization, Path planning, Path Smoothing and PID controller concepts. It is very flexible and easy to use. It supports multiple platforms. The source code is available on Github where you can find latest development and up-to-date documentation. Source : https://github.com/habsoft/robosim Blog : https://robosimblog.wordpress.com Note : Use jre 1.7 to run it. 1.Histogram Filter 2.Histogram Filter with Sonar... -
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Mastering Shiny
Mastering Shiny: a book
Mastering Shiny is a book (and its accompanying source repository) by Hadley Wickham that teaches people how to build interactive web applications using Shiny in R. It starts from basics (your first app, UI components, reactivity) and progresses to more advanced topics (dynamic UIs, modules, testing, security, performance). It is intended to help data scientists, analysts, or R users who may not have deep experience in web technologies become expert Shiny developers. The source code is open,... -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
...The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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Adamanborg
Adamanborg is evolved cybernetic organism with Ada.
Help: Adamanborg [ Options [ Parameters ] ] Help: Options : -F : Configuration filename => Wide_String -h : print this message => -q : quiet option => -x : running under X window system => -v : print the version => -o : running under textual 80x25 mode => -w : running under textual 160x64 mode => -W : running under textual 211x78 mode => -f : train filename for L1 => Wide_String -r : network filename for L1 => Wide_String -R : network filename for L2 => Wide_String -l : lexic filename => Wide_String -m : max epochs for L1 => Positive -M : max epochs for L2 => Positive -c : converged for L1 => Real -C : converged for L2 => Real -i : max iteration for L1 => Positive -n : initialize network for L1 => -N : initialize network for L2 => -U : univers filename => Wide_String -s : max samples for L1 => Positive -S : max samples for L2 => Positive -e : user name => Wide_String -H : hostname => Wide_String -P : Self programming process => -p : load manpages -
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HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields. HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). Please cite: [Khomtchouk et al.: "HeatmapGenerator: High performance RNAseq and microarray visualization...
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Hero and Villain Creator
Character Creator
Have you ever want to create your own character. This was created for my finals programming class. The program will let you create a login and once logged in you can create Characters and even put them through a battle analysis that will let you see their chances of winning. -
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R-gregmisc is a set of extension package for the open-source statistical environment/language "R''. It includes functions for plotting (gplots), data manupulation (gdata), modeling (gmodels), and programming tools (gtools), creation and management of sub-processes (fork), determing sample sizes for -omics experiments (ssize), and a variety of other packages.
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RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions). RPy has been superseded by the RPy2 project: https://rpy2.github.io/
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Chinese I Ching R Algorithms
Chinese I Ching Algorithms implemented with R programming
I Ching offers an idea to summary the world by constructing functional mappings in finite groups. Much of ancient Chinese natural and social science grew from its concepts as root. The derived theories like "Eight Diagrams", "Five Elements" became the foundation of nearly all academic fields in acient Chinese. As a result, the theories are also the high concentration of many practical and statistical experience in China during her thousands-of-year history. This project tries to realize... -
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Hibersap
A Java library to communicate with SAP
...It defines a set of Java annotations to map SAP function modules to Java classes as well as a small, clean API to execute these function modules and handle transaction and security aspects. Hibersap's programming model is quite similar to those of modern O/R mappers, significantly speeding up the development of SAP interfaces and making it much more fun to write the integration code. Under the hood, Hibersap either uses the SAP Java Connector (JCo) or a JCA compatible resource adapter to communicate with the SAP backend. While retaining the benefits of JCo and JCA like transactions, security, connection pooling, etc., developers can focus on writing business logic because the need for boilerplate code is largely reduced. -
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SGUI
A simple, small, cross platform GUI library in plain C89
SGUI is a small, simple, cross platform GUI library written in plain C89. It has a set of widgets, dialogs and supports OpenGL and Direct3D context creation, also including embedded rendering widgets within a window. SGUI has so far been successfully tested on various GNU/Linux distros on x86 and x86_64, as well as Windose operating systems from Windows 98 up to Windows 7. -
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cpR Chemical Pathology interface for R
A graphical user interface to R for use in Clinical Chemistry
This project is a graphical user interface to the R statistical programming language designed for use in Clinical Chemistry. It allows the user to perform Passing Bablok, Deming and Linear Regression and to produce high quality images in any file format for publication. The front end is written in Python 3.3 and PyQt4 and the form was designed using Qt4 Designer. The statistical analysis is written in R. -
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TeachingDemos
Bioinformatics related demos and tutorials using the R programming lan
Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License -
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ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
This repository contains the second programming assignment for an R course, focused on caching expensive computations by leveraging R’s scoping rules. The assignment walks you through creating a special matrix object that stores both a matrix and its cached inverse, avoiding repeated calls to costly operations. It builds on a worked example that caches the mean of a numeric vector, demonstrating how the operator preserves state across function calls. -
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PANDA
Passing Attributes between Networks for Data Assimilation
...PANDA integrates multiple sources of biological data, including protein-protein interaction, gene expression, and sequence motif information, in order to reconstruct genome-wide, condition-specific regulatory networks. PANDA is also available in other programming languages, including: MATLAB/Octave: (1) https://drive.google.com/a/channing.harvard.edu/file/d/0BwVdzX3nIj6RamtmNVdKYVk1N2c/view?usp=sharing (2) https://github.com/QuackenbushLab/matlab-panda Python: (1) https://github.com/davidvi/pypanda (2) https://github.com/QuackenbushLab/pypanda Bioconductor/R: http://www.bioconductor.org/packages/devel/bioc/html/pandaR.html For more information please see: https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda or email kimberly dot glass at channing dot harvard dot edu -
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...This pre-filtering may increase the speed by one to two orders of magnitude. CITATION: Wang, Q., Quensen, J. F., Fish, J. A., Lee, T. K., Sun, Y., Tiedje, J. M., and Cole, J. R. 2013. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. mBio 4:e00592-13.
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evolp/r
Logic Program Updates System
EVOLP/R is a logic program updates system, implemented in XSB Prolog. Reference: A. Saptawijaya, L. M. Pereira, Incremental Tabling for Query-Driven Propagation of Logic Program Updates, in: K. McMillan, A. Middeldorp, A. Voronkov (eds.), Procs. Intl. Conf. on Logic for Programming Artificial Intelligence and Reasoning (LPAR-19), Springer LNCS ARCoSS series, December 15-19, Stellenbosch, South Africa, 2013. -
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The C Programming Language, 2nd Edition
The K&R book exercises
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Very small and dynamic console typing tutor that starts and ends as a programming project after reading The C Programming Language by K&R.
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Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
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GISBox by Citiviz
Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...
GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software... -
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The interactive mathematical programming system GYWOPT is released as free software. It has been developed since early 2000 for experiments with the Integral Basis Method for integer programming by U.-U. Haus, M. Köppe and R. Weismantel.
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DiaT
DiaT is a Textadventure
DiaT stands for: Diat is a Textadventure - but its even more, Its an emulator for playing and creating Textadventures like back in the 80s. Its written in Java. It's a program that reads data from a human-readable xml file to create a text-based game, allowing people unfamiliar with programming to craft their own customized text adventures. Sounds and graphics can also be added.
