Search Results for "cell" - Page 3
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Showing 831 open source projects for "cell"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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D-Tale
Visualizer for pandas data structures
...To help guard against users loading the same data to D-Tale multiple times and thus eating up precious memory, we have a loose check for duplicate input data. If you are running ipython<=5.0 then you also have the ability to adjust the size of your output cell for the most recent instance displayed. JupyterHub has an extension that allows to proxy port for user, JupyterHub Server Proxy. -
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Spreadsheet Compare
Performs a cell-by-cell comparison of Excel Worksheets.
Spreadsheet Compare (Excel compare) is a Microsoft Excel Add-In, written in VBA, that performs a cell-by-cell comparison of Worksheets within the same or different Workbooks. Requires Excel 2000 or later. Check out the Home Page for more info! -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
...This model of prior information on potential ligand-target links can then be used to infer active ligand-target links between interacting cells. NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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CC3D
Multi-cell modeling platform
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datasets for multiple sclerosis CSF single-cell data. - paper: https://academic.oup.com/brain/article/147/2/554/7457295 - source codes: https://github.com/huangyh09/MSclerosisSrc
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tabularis
An open-source desktop client for modern databases.
Tabularis is a free, open-source desktop database client for PostgreSQL, MySQL/MariaDB, and SQLite. Built with Rust and Tauri v2, it is fast, lightweight, and cross-platform (Windows, macOS, Linux). Features: SQL Notebooks with inline charts and cross-cell variables. AI-powered SQL assistant (OpenAI, Claude, Ollama, and more). Built-in MCP server for AI agent integration. Visual Query Builder with drag-and-drop JOINs. Plugin system to add any database driver. Monaco-based editor with smart autocomplete. High-performance data grid with inline editing. ER Diagram visualization. SSH tunneling. ... -
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We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. ...
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This application creates off-line atlases of raster maps for various cell phone apps on Android, iPhone and WindowsCE as well as GPS devices (Garmin, Magellan and others)
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Beampath
Beam dynamics simulations in linear accelerators and beamlines
BEAMPATH is a 2D and 3D code for simulation of space charge dominated beam dynamics in linear particle accelerators and beam transport. The program is used for particle-in-cell simulation of axial-symmetric, quadrupole-symmetric and z-uniform beams in a channel containing RF gaps, radio-frequency quadrupoles, multipole lenses, solenoids, bending magnets, accelerating waveguides. Detailed description of model can be found in Y.K.Batygin, “Particle-in-cell code BEAMPATH for beam dynamics simulations in linear accelerators and beamlines” Nuclear Instruments and Methods in Physics Research A 539 (2005) 455–489. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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Candid PDF Table
CandidPDFTable – Deterministic TCPDF Table Builder
CandidPDFTable (Candid PDF Table Builder) is a deterministic, colspan-aware table builder designed specifically for TCPDF. It provides a clean and predictable API to construct HTML tables for TCPDF::writeHTML() using explicit, cell-owned borders and late-stage layout computation. The library is built for programmatic table generation where precise control over rows, columns, colspans, borders, and serial numbering is essential. Building complex tables directly in TCPDF becomes difficult once HTML is rendered. CandidPDFTable solves this by adopting a cell-centric model where each cell independently owns its borders and styles. ... -
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AnaSP
AnaSP, a MATLAB software suite to ANAlyse SPheroids' features
Today, more and more biological laboratories use 3D cell cultures and tissues growth in vitro as model of in vivo tumours and metastasis. However, a lack of methods for quantitative analysis, limits the usage of spheroids as model for routine experiments. AnaSP is a suite tool for automatic analysis of morphological parameters of spheroids starting by brightfield images manually acquired with a standard widefield microscope. -
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MixedCursorCollection
Animated/static cursor schemes + cursors in mixed colors + rainbow
771,000 animated and static cursor schemes and cursors in red, green, blue, yellow, aqua, orange, purple, pink, white, grey, black, brown, rainbow, and custom color. This interactive archive contains a large number of multi-resolution (128 x 128 and 64 x 64) animated and static cursors that have been specially encoded using algorithmic techniques to pack ~771,000+ cursors / files and ~1.7 Tb (~118 Gb when the PNG format option is employed) of data into an ultra-compact app of ~2.2... -
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Intent Snake
Terminal A/B benchmark for LLM Snake route planning
Intent Snake is a terminal AI game for comparing two OpenAI-compatible LLM agents on the same deterministic Snake maze. Model A and Model B control separate snakes in identical arenas. The local engine advances forced corridors one cell every 500 ms and calls a model only at junctions with multiple legal routes. Compare route planning, score, food collected, survival, decision count, latency, and replay. The Vault Citadel arena contains 21 food items, an outer ring, and three vault loops that test safe planning as the snake grows. Source: https://github.com/pidefu/intent-snake. ... -
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CellMAP
CellMAP: an open-source software tool to batch-process cells from AFM
CellMAP: an open-source software tool to batch-process cell topography and elasticity maps collected by atomic force microscopy. The software enables synchronized selection among multiple datasets. -
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ipychart
The power of Chart.js with Python
...The charts created are fully configurable, interactive, and modular and are displayed directly in the output of the cells of your jupyter notebook environment. Charts are fully interactive, you can hover it to display tooltips and select the information you want to see directly from the output cell of your notebook. All the types of charts present in Chart.js are exposed in ipychart. Even complex features such as mixed-types charts are available. Charts are highly customizable and all Chart.js options are available in ipychart. You have complete control over the appearance of your chart. -
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NeuroML is an XML-based description language for defining and exchanging neuronal cell, network and modeling data including reconstructions of cell anatomy, membrane physiology, electrophysiological data, network connectivity, and model specification
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KherveSheet
Excel for scientists: high-quality plots, Python in cells, AI side bar
...You have full control over axes, scales, ticks, titles and grids. Curve fitting and peak fitting are supported, with goodness-of-fit reporting overlaid on the plot. Every cell can also run a full Python program, not just a formula. An integrated AI assistant can generate the cell code from a plain-language description if needed. Learn by doing with 300 ready-made scientific examples covering plotting, data analysis, fitting and simulation. Built entirely in Python, KherveSheet adds a familiar Excel-style grid, an optimisation solver, and a native .ksheet format with CSV and Excel import/export. ... -
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Project:Vulcan
A Model Rocket Motor Test Stand
Project Vulcan is a model rocket motor test stand. Which means at its core it is a measuring device. It measures how much thrust a motor produces. We measure this thrust through the use of a load cell – the same type of electronic device that is in your weight scale. With this test stand the motor is placed in a downward position (with the motor exhaust coming out of the top). When the motor is ignited it presses down on the load-cell. That creates a small change in the electrical current and that change is measured and recorded. ... -
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AnalyRIM
Spreadsheet/dbms
Spreadsheet and DBMS which runs on terminals or terminal emulators (like gnome terminal, xterm, and many others). Buildable on Linux or windows+cygwin Added logic to make more space displayable (see aparms.inc or copies thereof). Many advanced functions, each cell can contain a program. Start with analyrimlinux.zip. Build with analy-install.shellscriipt -
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FCS mini
FCS mini is the free software for the analysis of Flow cytometry data
FCS mini is the software for FACS (Flow cytometry) analysis. It works on windows 10, 11. English and Korean languages are supported (each version exists). Just unzip the FCS_mini~.zip and double click the FCS_mini.exe inside the FCS_mini folder. You can find the tutorial video here ( https://youtu.be/iOxnx1OKJr8 for English subtitle, and https://youtu.be/ygQhh2AE2Q4 for Korean subtitle - 한글판 - ). This is a freeware ; however, distribution, modification, reverse engineering, and any... -
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IsoQuant
Transcript discovery and quantification with long RNA reads
...If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon, and intron quantification. If reads are grouped (e.g. according to a cell type), counts are reported according to the provided grouping. The latest IsoQuant version can be downloaded from github.com/ablab/IsoQuant/releases/latest. Full IsoQuant documentation is available at ablab.github.io/IsoQuant. -
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Smilei
Particle-in-cell code for plasma simulation
Smilei is an open-source electromagnetic Particle-In-Cell code for kinetic plasma simulation. It is designed for high-performance computing and can run on modern supercomputing architectures. The software is co-developed by physicists and computer scientists, which gives it both strong numerical physics capabilities and serious parallel-performance engineering. Smilei supports a wide range of plasma studies, including laser-plasma interaction, accelerator physics, space physics, and astrophysical plasmas. ... -
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Integral is music player for cell phones and other mobile devices with J2ME. This player has outstanding ability to keep played statuses for each track in the playlist. It has three possible statuses for each track: new, played or partially played.
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages,...
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SheetAtlas
Search and compare data across multiple Excel files instantly
...Data Export Export to Excel or CSV with column filtering, semantic names, data regions support and preserved formatting. Template Validation Create templates, batch validate files, detect type inconsistencies. Data Normalization Automatically correct cell types based on dominant column data — dates stored as numbers, mismatched formats fixed in-place. Customization Light/Dark/System theme, configurable defaults, custom output folder. PLATFORMS Windows, Linux, macOS — native installers available
