Microscopy (17)
Read .dm3 and .dm4 image files
Read Digital Micrograph files for electron microscopy
Imagic, MRC, DM and STAR file i/o
Functions for reading and writing image files and STAR files for electron microscopy
Microscopy Image Browser 2 (MIB2)
MIB2 is an update package for segmentation of multi-dimensional (2D-4D) microscopy datasets
Novel Retinal Vessel Segmentation Algorithm: Fundus Images
The algorithm presented here segments retinal blood vessels with a high degree of accuracy.
High-Throughput, Algorithmic Determination of Nanoparticle Structure from Electron Microscopy Images
Automated analysis of electron microscopy images (PC and Mac versions available.)
Machine learning assisted hyperspectral imaging
Automatic detection of nanoparticles using hyperspectral microscopy and machine learning
neuropoly/axonseg
AxonSeg is a GUI that performs axon and myelin segmentation on histology images.
Microscopy Image Browser (MIB)
MIB is a package for segmentation of multi-dimensional (2D-4D) microscopy datasets
Synthetic Bright-Field Microscopy Image Generator
This is a synthetic image generation tool that can create realistic Pap-smear images
Best Infocus Image from Image Stack
This code Find out the best infocus image from a image stack using Tamura coefficient.
Nonlinear Drift Correction from Scanning Probe Microscopy (SPM) Orthogonal Image Pairs
Correct nonlinear drift distortions in scanning probe images.
Microvessel Segmentation, analysis in Immunohistochemistry slices
Automatic segmentation and morphological analysis of microvessels in histological tumour sections
GUI for detection of cells for Integrated Light and Electron Microscopy
GUI for detection of fluorescent cells in In-Resin Fluorescence sections
Measure Myelin-to-Axon Diameter
The M-file is to calculate the g-ratio for Scanning or Transmission Electronic Microscopy.
DENSIFE
Densitometry software.
Filter noise and interpolate microscopy images in frequency domain
Remove spatial frequencies beyond the optical cutoff and perform physically accurate interpolation.
StackSlider
GUI for displaying image stacks, e.g. time-resolved or z-stacked microscopy images.
