make readSpatialxe output from nf-core spatialxe #53
Description
nf-core pipeline on 10X Xenium data
some overview here:
- https://summit.nextflow.io/2024/barcelona/posters/10-31--spatialxe---standard-processing/
- https://github.com/heylf/spatialxe
- and on nfcore.slack.com #spatialxe, most recent discussions are there
needed:
- specifics on output that can be used
- toy dataset