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Commits on Feb 6, 2015

• Added option to filter reads by SAM flag in bamCompare and bamCoverage

  fidelram

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Commits on Jan 30, 2015

• Improve check for genome length to avoid bx-python exception in the rare case that a bam file reports a genome length different than that of the 2bit file.

  fidelram

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Commits on Jan 22, 2015

• fix typo

  fidelram

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Commits on Jan 21, 2015

• Merge pull request #68 from fidelram/galaxy_updates

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  8643009

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• style fixes

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  0b5f307

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• fix quoting of strings

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Commits on Jan 15, 2015

• added meaningful error message when running bamCompare using a BED file that contains unmatched chromosome names

  fidelram

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Commits on Jan 4, 2015

• upgrade to new scientific python stack

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Commits on Dec 22, 2014

• more macro usage and a few cleanups

  bgruening

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  347b27a

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• add unit tests, simplify wrappers, style fixes

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  e690df2

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• add new test files

  bgruening

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  e1a6cec

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• add new test files

  bgruening

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  c1e7f7b

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• remove old test files

  bgruening

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Commits on Dec 21, 2014

• style updates, upgrade to new version

  bgruening

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Commits on Dec 16, 2014

• fixed problem when computing bin averages. Before, the result always included one base pair more

  fidelram

  committed
  c87a0e4

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• fixed problem when computing bin averages. Before, the result always included one base pair more

  fidelram

  committed
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Commits on Nov 6, 2014

• Unified the plotting of heatmaps from bigwigCorrelate and bamCorrelate. Added option to include/remove correlation numbers. Fixed issue with bigwigCorrelate that caused a block

  fidelram

  committed
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Commits on Nov 5, 2014

• Update parserCommon.py

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  friedue

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• Update computeMatrix

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  friedue

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Commits on Oct 29, 2014

• Reorganized usage parameters

  fidelram

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• Merge branch 'master' of https://github.com/fidelram/deepTools

  fidelram

  committed
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• Fixed typo in bamCorrelate help message

  fidelram

  committed
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Commits on Oct 28, 2014

• update of image

  

  friedue

  committed
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• image thumbnails update

  

  friedue

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• more images for the gallery

  

  friedue

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Commits on Oct 23, 2014

• updated image

  

  friedue

  committed
  39cba2b

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• adding new gallery images

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  friedue

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Commits on Oct 7, 2014

• Fixed issue #63

  fidelram

  committed
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Commits on Sep 24, 2014

• fixed issue #62

  fidelram

  committed
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Commits on Sep 9, 2014

• updated version number to reflect fix update

  fidelram

  committed
  351890e

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• FIX: bamCorrelate in bed mode was not always considering the whole bed region, only a one bp region.

  fidelram

  committed
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Commits on Sep 8, 2014

• added CHANGES.txt file

  fidelram

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Commits on Sep 5, 2014

• rename the bin file

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• addressing issue #59. Now an error message is given when few valid regions are found

  fidelram

  committed
  ea2d52d

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• improved error message

  fidelram

  committed
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