CRI-MAP is (old) software for linkage map construction with data on pedigrees. The version 2.4 (1990-03-26) code taken from http://compgen.rutgers.edu/crimap (in particular http://compgen.rutgers.edu/downloads/crimap.source.zip) with a few small changes to get it to compile with gcc version 11.3.0.

Documentation at https://saf.bio.caltech.edu/saf_manuals/crimap-doc.html.

Compile the software with:

gcc -O -o crimap *.c -lm

Made the following changes to get it to compile:

• In e_ped.c, added argument to calls to exit()

• In our_allo.c and our_orde.c, moved definition of morecore to earlier in the file

• In defs.h, changed typedef INT from int to long

• Adjusted a bunch of parameters in defs.h, e_conv.c, and e_crimap.c

• In e_crimap.c, changed print statements to print estimated map with greater precision