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Commits on Feb 5, 2023

• Edit figures for GBP final proof (#125)

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Commits on Sep 29, 2022

• Minor figure format edits (#124)

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Commits on Sep 10, 2022

• Add stats test based on reviewer comment (#123)

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Commits on Aug 2, 2022

• reorder fig based on mention in text (#122)

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Commits on Jul 5, 2022

• Edit reviewer experiment (#121)

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Commits on Jun 29, 2022

• Update readme (#120)

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Commits on Jun 28, 2022

• Reviewer edits (#119)

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Commits on Feb 3, 2022

• Minor updates to figures (#103)

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Commits on Jan 14, 2022

• Add a couple of small analysis based on reviewer comments (#102)

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Commits on Oct 11, 2021

• Small refactor (#101)

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Commits on Oct 5, 2021

• Update to latest version of ponyo (#98)

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Commits on Sep 28, 2021

• Add new analysis using Pa rnaseq data (#96)

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Commits on Sep 24, 2021

• Update Figure 5 (#95)

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Commits on Sep 20, 2021

• Update workflow figure (#94)

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Commits on Sep 1, 2021

• update readme with new crow et al analysis (#93)

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Commits on Aug 27, 2021

• Review Crow et al data and update figures (#92)

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Commits on Aug 24, 2021

• Crow et al model (#90)

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• Revise figures (#91)

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Commits on Jul 29, 2021

• Try MR normalized input data (#89)

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Commits on Jul 15, 2021

• Address user issues (#87)

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Commits on Jul 8, 2021

• Compare common vs other gene expression (#85)

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Commits on May 21, 2021

• More figure updates (#81)

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Commits on May 19, 2021

• Update figures with new acronym (#80)

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Commits on Apr 30, 2021

• Debug pytest failing (#79)

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Commits on Apr 23, 2021

• Compare VAE vs noise simulation (#78)

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Commits on Apr 20, 2021

• Update manuscript figures (#77)

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Commits on Apr 13, 2021

• More experiments looking into missing generic genes (#75)

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Commits on Apr 2, 2021

• Refactor repo (#74)

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Commits on Mar 31, 2021

• Add new experiment examining counts before and after simulation (#73)

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Commits on Mar 26, 2021

• Update manuscript figures (#72)

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Commits on Mar 24, 2021

• Explore uncorrelated generic genes (#71)

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Commits on Mar 5, 2021

• Compare degree + centrality measures for generic vs. non-generic genes (#70)

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Commits on Mar 2, 2021

• Community detection analysis on eADAGE correlation network (#68)

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• Update figures (#67)

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Commits on Feb 22, 2021

• Create G-G network visualization (#65)

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