# variancePartition Manuscript describing `dream` for differential expression in [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaa687) Manuscript describing the `variancePartition` package in [BMC Bioinformatics](https://doi.org/10.1186/s12859-016-1323-z) ### Install from GitHub ```r library(devtools) install_github("GabrielHoffman/variancePartition") ``` ### Notes This is a developmental version. For stable release see [Bioconductor version](http://bioconductor.org/packages/variancePartition/). For questions about specifying contrasts with dream, see [examples here](https://gist.github.com/GabrielHoffman/aa993222bae4d6b7d1caea2334aedbf7). See [frequently asked questions](http://bioconductor.org/packages/devel/bioc/vignettes/variancePartition/inst/doc/FAQ.html). See repo of [examples from the paper](https://github.com/GabrielHoffman/dream_analysis). ### Reporting bugs Please help speed up bug fixes by providing a 'minimal reproducible example' that starts with a new R session. I recommend the [reprex package](https://reprex.tidyverse.org) to produce a GitHub-ready example that is reproducable from a fresh R session.